RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858		B4E1Z4	1266 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858		E7EWF7	191 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	GOLGA6L19	H0YKK7	550 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858		H3BNC9	293 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	DVL2	O14641	736 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	KIN	O60870	393 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	DTNB	O60941	627 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PCDH8	O95206	1070 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	TUBB4A	P04350	444 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ZFY	P08048	801 aa	Predicted RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	SNRPA1	P09661	255 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	FAM153B	P0C7A2	387 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	TNNT1	P13805	278 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	U2AF2	P26368	475 aa	Known RBP eCLIP	2.81	□□□□□ -1.96	2e-10	■■■■■ 39.7
SPG11-223	ENST00000560858	PROK1	P58294	105 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	FAM193A	P78312	1265 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	TFCP2	Q12800	502 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	EIF2B5	Q13144	721 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	STK3	Q13188	491 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CAMK4	Q16566	473 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	MTX3	Q5HYI7	312 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	AGAP9	Q5VTM2	703 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ANKS6	Q68DC2	871 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ADAL	Q6DHV7	355 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ABHD17C	Q6PCB6	329 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	LMBR1L	Q6UX01	489 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC129	Q6ZRS4	1044 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	UBE3B	Q7Z3V4	1068 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	LRRC8A	Q8IWT6	810 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CCAR1	Q8IX12	1150 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	RHOT2	Q8IXI1	618 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	MB21D2	Q8IYB1	491 aa	Predicted RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CCAR2	Q8N163	923 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	AOPEP	Q8N6M6	819 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CDYL2	Q8N8U2	506 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	FSIP1	Q8NA03	581 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	RNF169	Q8NCN4	708 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	LINC00301	Q8NCQ3	95 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC112	Q8NEF3	446 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ZNF397	Q8NF99	534 aa	Predicted RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	OR56A1	Q8NGH5	318 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PLBD2	Q8NHP8	589 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	KLHDC4	Q8TBB5	520 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	MRPS27	Q92552	414 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	FUBP1	Q96AE4	644 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PTCD3	Q96EY7	689 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ERO1A	Q96HE7	468 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	SCLY	Q96I15	445 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	BOD1	Q96IK1	185 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ZNF496	Q96IT1	587 aa	Predicted RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	SEC62	Q99442	399 aa	Known RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	FTO	Q9C0B1	505 aa	Known RBP eCLIP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	SIL1	Q9H173	461 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	CPNE5	Q9HCH3	593 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	GALNT9	Q9HCQ5	603 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ANO10	Q9NW15	660 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PAG1	Q9NWQ8	432 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PODXL2	Q9NZ53	605 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	OGFR	Q9NZT2	677 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	NRBP1	Q9UHY1	535 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PCDHB6	Q9Y5E3	794 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	MORC2	Q9Y6X9	1032 aa	Predicted RBP	2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	PHLPP2	Q6ZVD8	1323 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	MYPN	Q86TC9	1320 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	STK36	Q9NRP7	1315 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	STRC	Q7RTU9	1775 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	FOCAD	Q5VW36	1801 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	ATAD5	Q96QE3	1844 aa		2.81	□□□□□ -1.96
SPG11-223	ENST00000560858	NHS	Q6T4R5	1651 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	DISP2	A7MBM2	1401 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	CDHR2	Q9BYE9	1310 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	PCDH11X	Q9BZA7	1347 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	PCDH11Y	Q9BZA8	1340 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC151	A5D8V7	595 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC69	A6NI79	296 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	USP27X	A6NNY8	438 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858		H3BQV1	296 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858		M0R2C6	588 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	EYA2	O00167	538 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	RNF113A	O15541	343 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	NRP2	O60462	931 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	HSPD1	P10809	573 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	SKIL	P12757	684 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	FDPS	P14324	419 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	H2AFX	P16104	143 aa	Predicted RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	WT1	P19544	449 aa	Predicted RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	PDIA3	P30101	505 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	IL15	P40933	162 aa	Predicted RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	MECP2	P51608	486 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	NRG3	P56975	720 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	TUBA4A	P68366	448 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	KIF23	Q02241	960 aa	Predicted RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	AIMP1	Q12904	312 aa	Known RBP	2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	SLC39A6	Q13433	755 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	RASGRF1	Q13972	1273 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	PTPN14	Q15678	1187 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	DPCR1	Q3MIW9	517 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	CCDC93	Q567U6	631 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	TRIM61	Q5EBN2	209 aa		2.8	□□□□□ -1.96
SPG11-223	ENST00000560858	METRNL	Q641Q3	311 aa		2.8	□□□□□ -1.96

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