RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NUDT2P50583 147 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 RIPK1Q13546 671 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 LLGL2Q6P1M3 1020 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 C6orf89Q6UWU4 347 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 OLFML1Q6UWY5 402 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 NANOGNBQ7Z5D8 188 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 EXD1Q8NHP7 514 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 FAM84AQ96KN4 292 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PCDHB18PQ96TA0 734 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZNF184Q99676 751 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 FAM96AQ9H5X1 160 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DDX18Q9NVP1 670 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 KLHL8Q9P2G9 620 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 SLC24A2Q9UI40 661 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PCDHA10Q9Y5I2 948 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 MED1Q15648 1581 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 A0A1B0GW55 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 TGFB1I1O43294 461 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 EXTL3O43909 919 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4L2P0CJ85 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4L3P0CJ86 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4L4P0CJ87 422 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4L5P0CJ88 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4L6P0CJ89 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4L7P0CJ90 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ABCD1P33897 745 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 SOX11P35716 441 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PTGIRP43119 386 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 CCDC85BQ15834 202 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 ATP13A4Q4VNC1 1196 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 OTOP1Q7RTM1 612 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ALYREFQ86V81 257 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 CPNE8Q86YQ8 564 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 CDKL3Q8IVW4 592 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 UBA3Q8TBC4 463 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 UPF3AQ9H1J1 476 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 BCAS3Q9H6U6 928 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.41□□□□□ -1.22
USP3-210ENST00000559192 DUX4Q9UBX2 424 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DNAJC16Q9Y2G8 782 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DUOX1Q9NRD9 1551 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 SPDYE5A6NIY4 337 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 H0YGN5 161 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 RHOBTB1O94844 696 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 KLHL2O95198 593 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 SPATA31C1P0DKV0 1188 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 TAC1P20366 129 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 SDC4P31431 198 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 NPTX2P47972 431 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 CYP24A1Q07973 514 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 MFSD7Q6UXD7 560 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PDZD4Q76G19 769 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 ZNF570Q96NI8 536 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 GCOM2Q9BZD3 368 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 AS3MTQ9HBK9 375 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 FBXO6Q9NRD1 293 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 GRHL1Q9NZI5 618 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 APPL1Q9UKG1 709 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 STXBP5LQ9Y2K9 1186 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 NFS1Q9Y697 457 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZMYM2Q9UBW7 1377 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 FER1L4A9Z1Z3 1794 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 CAPN1P07384 714 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 HMGB2P26583 209 aaKnown RBP7.4□□□□□ -1.22
USP3-210ENST00000559192 RAP1GAPP47736 663 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 DRG2P55039 364 aaKnown RBP7.4□□□□□ -1.22
USP3-210ENST00000559192 SPRED3Q2MJR0 410 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 EFHC1Q5JVL4 640 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 HABP4Q5JVS0 413 aaKnown RBP7.4□□□□□ -1.22
USP3-210ENST00000559192 SNRNP48Q6IEG0 339 aaKnown RBP7.4□□□□□ -1.22
USP3-210ENST00000559192 EME1Q96AY2 570 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 PGBD4Q96DM1 585 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 LRRC19Q9H756 370 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 C20orf96Q9NUD7 363 aaPredicted RBP7.4□□□□□ -1.22
USP3-210ENST00000559192 ATP9BO43861 1147 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 ADRB2P07550 413 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 FMO1Q01740 532 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 OCRLQ01968 901 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 FAAP100Q0VG06 881 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 WDR72Q3MJ13 1102 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 IYDQ6PHW0 289 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 ZDHHC24Q6UX98 284 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 C1orf186Q6ZWK4 172 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 OTOAQ7RTW8 1153 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 RNF135Q8IUD6 432 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 EFCAB3Q8N7B9 438 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 OR6B3Q8NGW1 331 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 CMTM5Q96DZ9 223 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 AGAP3Q96P47 875 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 SIKE1Q9BRV8 207 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 ZBED2Q9BTP6 218 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 CCDC90BQ9GZT6 254 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 FBXO28Q9NVF7 368 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 ARL8BQ9NVJ2 186 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 IL1RAPL1Q9NZN1 696 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 STX18Q9P2W9 335 aaKnown RBP7.4□□□□□ -1.22
USP3-210ENST00000559192 ARHGAP26Q9UNA1 814 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 AURKCQ9UQB9 309 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 IVNS1ABPQ9Y6Y0 642 aa7.4□□□□□ -1.22
USP3-210ENST00000559192 EME2A4GXA9 379 aaPredicted RBP7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms