RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SCNN1AP37088 669 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 NDUFV1P49821 464 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ERVFC1P60507 584 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 KRT83P78385 493 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ROR1Q01973 937 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ARID5AQ03989 594 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 SMC1AQ14683 1233 aaKnown RBP10.14□□□□□ -0.79
LIMA1-211ENST00000552338 KIAA1841Q6NSI8 718 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 CLEC20AQ6ZU45 233 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ARCQ7LC44 396 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 FAM35AQ86V20 835 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 CEP57Q86XR8 500 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 GLYCTKQ8IVS8 523 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ZMIZ2Q8NF64 920 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 SMARCD1Q96GM5 515 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 SPATA17Q96L03 361 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 C8orf48Q96LL4 319 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 KLHL5Q96PQ7 755 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 MIS12Q9H081 205 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 NKX2-4Q9H2Z4 354 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 SLC28A3Q9HAS3 691 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 COMMD8Q9NX08 183 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 HESX1Q9UBX0 185 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 CEP83Q9Y592 693 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 ADGRG1Q9Y653 693 aa10.14□□□□□ -0.79
LIMA1-211ENST00000552338 MYO7AQ13402 2215 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 FAM92AA1XBS5 289 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 TNFRSF10BO14763 440 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 AKR1B10O60218 316 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 LPXNO60711 386 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 CXCL14O95715 111 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 POU2F2P09086 479 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 CNPP09543 421 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 HAPLN1P10915 354 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 CD19P15391 556 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 OR1D2P34982 312 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 ACADSBP45954 432 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 TUFMP49411 452 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 HADHBP55084 474 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 SNX16P57768 344 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PSMC1P62191 440 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PDE4CQ08493 712 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 GPM6BQ13491 265 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 KCNC3Q14003 757 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 ZNF268Q14587 947 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 MDH1BQ5I0G3 518 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PRPF38BQ5VTL8 546 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PPP2R2DQ66LE6 453 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 GPR153Q6NV75 609 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PRSS55Q6UWB4 352 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 MON1BQ7L1V2 547 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 SPRED2Q7Z698 418 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PALB2Q86YC2 1186 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 ZDHHC17Q8IUH5 632 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 TCEAL8Q8IYN2 117 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 MCOLN2Q8IZK6 566 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 SLC2A14Q8TDB8 520 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 UBE2Q2Q8WVN8 375 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 MYLPFQ96A32 169 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 TIFAQ96CG3 184 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 CALR3Q96L12 384 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 B3GALT6Q96L58 329 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 SMOQ99835 787 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 DEF6Q9H4E7 631 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 ALG13Q9NP73 1137 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 AVENQ9NQS1 362 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 TMEM30AQ9NV96 361 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 WDR35Q9P2L0 1181 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 CYTH4Q9UIA0 394 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 REXO2Q9Y3B8 237 aaKnown RBP10.13□□□□□ -0.79
LIMA1-211ENST00000552338 PCDHB5Q9Y5E4 795 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 CDY1Q9Y6F8 540 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 USP3Q9Y6I4 520 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 ANAPC1Q9H1A4 1944 aa10.13□□□□□ -0.79
LIMA1-211ENST00000552338 A0A0A6YYK5 440 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 C19orf67A6NJJ6 358 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 SPDYE4A6NLX3 237 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TRIM66O15016 1216 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TEX28O15482 410 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 ADAM12O43184 909 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 GABBR2O75899 941 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 BEST1O76090 585 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 CLSTN1O94985 981 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 CALCAP01258 141 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 FTLP02792 175 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 ADH1AP07327 375 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TMEM253P0C7T8 217 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 FAM200BP0CF97 657 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 MYBL1P10243 752 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 CCDC130P13994 396 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 HOXA9P31269 272 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 GFPT1Q06210 699 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 ORC1Q13415 861 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 MTF1Q14872 753 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 GOLGA7BQ2TAP0 167 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 SLC39A12Q504Y0 691 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 PM20D1Q6GTS8 502 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 PLEKHA7Q6IQ23 1121 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 PMF1Q6P1K2 205 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 DENND1BQ6P3S1 775 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms