RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 RPN1P04843 607 aaKnown RBP17.44■□□□□ 0.38
VPS29-207ENST00000549970 TRIM68Q6AZZ1 485 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 VSTM1Q6UX27 236 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 RALGPS2Q86X27 583 aaPredicted RBP17.44■□□□□ 0.38
VPS29-207ENST00000549970 TTC16Q8NEE8 873 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 MYCBPAPQ8TBZ2 947 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 PARD3BQ8TEW8 1205 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 ATRIPQ8WXE1 791 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 SYAP1Q96A49 352 aaPredicted RBP17.44■□□□□ 0.38
VPS29-207ENST00000549970 HINFPQ9BQA5 517 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 SCAND2PQ9GZW5 306 aaPredicted RBP17.44■□□□□ 0.38
VPS29-207ENST00000549970 XYLT2Q9H1B5 865 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 KCTD10Q9H3F6 313 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 DPEP3Q9H4B8 488 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 KIF9Q9HAQ2 790 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 GKN1Q9NS71 199 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 DMAC2Q9NW81 257 aa17.44■□□□□ 0.38
VPS29-207ENST00000549970 EP300Q09472 2414 aaPredicted RBP17.43■□□□□ 0.38
VPS29-207ENST00000549970 WDR87Q6ZQQ6 2873 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 GREB1Q4ZG55 1949 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 FAM237AA0A1B0GTK4 181 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 SOBPA7XYQ1 873 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 PDXKO00764 312 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 STAU1O95793 577 aaKnown RBP17.43■□□□□ 0.38
VPS29-207ENST00000549970 NR3C1P04150 777 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 ANXA13P27216 316 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 ATICP31939 592 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 LRRC32Q14392 662 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 PON2Q15165 354 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 ZNF699Q32M78 642 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 ITPRIPL2Q3MIP1 535 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 WDR44Q5JSH3 913 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 CEP135Q66GS9 1140 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 SLC9A9Q8IVB4 645 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 RIN3Q8TB24 985 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 CCDC47Q96A33 483 aaKnown RBP17.43■□□□□ 0.38
VPS29-207ENST00000549970 ELMO3Q96BJ8 720 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 SLC22A12Q96S37 553 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 IER2Q9BTL4 223 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 GOLPH3LQ9H4A5 285 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 EBF3Q9H4W6 596 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 SMYD3Q9H7B4 428 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 GDPD2Q9HCC8 539 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 ZSCAN32Q9NX65 697 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 PCDHGA2Q9Y5H1 932 aa17.43■□□□□ 0.38
VPS29-207ENST00000549970 GVINP1Q7Z2Y8 2422 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 TRAV19A0A0A6YYK7 116 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 A8MXQ7 604 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 TRIM66O15016 1216 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 CKMP06732 381 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 FAM163BP0C2L3 166 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 PTPN1P18031 435 aaKnown RBP17.42■□□□□ 0.38
VPS29-207ENST00000549970 CCR3P51677 355 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 AP3M2P53677 418 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 USP46P62068 366 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 DLG4P78352 724 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 NCOA4Q13772 614 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 GAS6Q14393 721 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 CC2D1AQ6P1N0 951 aaPredicted RBP17.42■□□□□ 0.38
VPS29-207ENST00000549970 SCARA5Q6ZMJ2 495 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 DENND5BQ6ZUT9 1274 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 SPATA17Q96L03 361 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 CYP2S1Q96SQ9 504 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 FAM83CQ9BQN1 747 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 HPS4Q9NQG7 708 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 ANAPC1Q9H1A4 1944 aa17.42■□□□□ 0.38
VPS29-207ENST00000549970 A0A1W2PQ27 194 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 A0A1W2PQ64 194 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 A0A1W2PQD8 194 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 C2orf78A6NCI8 922 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 F8VP50 259 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 CALUO43852 315 aaPredicted RBP17.41■□□□□ 0.38
VPS29-207ENST00000549970 C4BPAP04003 597 aaKnown RBP17.41■□□□□ 0.38
VPS29-207ENST00000549970 USP17L7P0C7H9 530 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 RAP1GAPP47736 663 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 CDH8P55286 799 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 CLDN10P78369 228 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 SATB1Q01826 763 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 FAM160A1Q05DH4 1040 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 DPYDQ12882 1025 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 RUNX3Q13761 415 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 ZNF268Q14587 947 aaPredicted RBP17.41■□□□□ 0.38
VPS29-207ENST00000549970 PPP2R5DQ14738 602 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 ZNF667Q5HYK9 610 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 KRBA2Q6ZNG9 492 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 Q6ZS52 159 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 ARL14EPQ8N8R7 260 aaPredicted RBP17.41■□□□□ 0.38
VPS29-207ENST00000549970 ZBTB44Q8NCP5 570 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 B3GALNT2Q8NCR0 500 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 NELL1Q92832 810 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 ZNF518BQ9C0D4 1074 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 VRTNQ9H8Y1 702 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 MAPK8IP1Q9UQF2 711 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 FRMD4BQ9Y2L6 1034 aa17.41■□□□□ 0.38
VPS29-207ENST00000549970 OTOL1A6NHN0 477 aaPredicted RBP17.4■□□□□ 0.38
VPS29-207ENST00000549970 CLDN5O00501 218 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 RHOBTB3O94955 611 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 ZNF202O95125 648 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 KIF20AO95235 890 aa17.4■□□□□ 0.38
VPS29-207ENST00000549970 VNN1O95497 513 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms