RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TAF1CQ15572 869 aaPredicted RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 NFIL3Q16649 462 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 C15orf59Q2T9L4 293 aaPredicted RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 HSDL1Q3SXM5 330 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 BOLA3Q53S33 107 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 CATSPERGQ6ZRH7 1159 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 FBXO41Q8TF61 875 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 NCANO14594 1321 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 GNAT1P11488 350 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 ACO1P21399 889 aaKnown RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 JADE1Q6IE81 842 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 DENND5BQ6ZUT9 1274 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 KIRREL3Q8IZU9 778 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.35■□□□□ 0.21
CUX1-211ENST00000546411 SKA2Q8WVK7 121 aaPredicted RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 NCAPGQ9BPX3 1015 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 MTFR1LQ9H019 292 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 MANSC1Q9H8J5 431 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 GTSE1Q9NYZ3 720 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 SYNPO2Q9UMS6 1093 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 BTNL10A8MVZ5 291 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 TBC1D12O60347 775 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 SNRPAP09012 282 aaKnown RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 ACAT1P24752 427 aaKnown RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 MIPP30301 263 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 AUHQ13825 339 aaKnown RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 TAF1BQ53T94 588 aaPredicted RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 REPS2Q8NFH8 660 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 CLEC4DQ8WXI8 215 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 FOXP3Q9BZS1 431 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 TSR3Q9UJK0 312 aaKnown RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 M0QYT0 321 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 DDX3YO15523 660 aaKnown RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 ATP5HO75947 161 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 CST3P01034 146 aaPredicted RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 CYP1A2P05177 515 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 NCAM1P13591 858 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 ATXN3P54252 364 aaPredicted RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 KIAA1841Q6NSI8 718 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 VDRP11473 427 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 PGM1P36871 562 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 ELK3P41970 407 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 NCKAP1LP55160 1127 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 JAM2P57087 298 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 ART3Q13508 389 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 DGKDQ16760 1214 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 GNASQ5JWF2 1037 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 SAMD3Q8N6K7 520 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 NOD2Q9HC29 1040 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 AVENQ9NQS1 362 aaPredicted RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 ACKR2O00590 384 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 NFICP08651 508 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 TGFB3P10600 412 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 MX2P20592 715 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 PMLP29590 882 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 STX3Q13277 289 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 MAP1SQ66K74 1059 aaPredicted RBP16.34■□□□□ 0.21
CUX1-211ENST00000546411 IL31Q6EBC2 164 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 MREGQ8N565 214 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 NETO2Q8NC67 525 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 CNPY3Q9BT09 278 aa16.34■□□□□ 0.21
CUX1-211ENST00000546411 ROBO1Q9Y6N7 1651 aa16.33■□□□□ 0.21
CUX1-211ENST00000546411 E5RJQ4 531 aa16.33■□□□□ 0.21
CUX1-211ENST00000546411 SKIP12755 728 aa16.33■□□□□ 0.21
CUX1-211ENST00000546411 ZFXP17010 805 aaPredicted RBP16.33■□□□□ 0.21
CUX1-211ENST00000546411 STIP1P31948 543 aaKnown RBP16.33■□□□□ 0.21
CUX1-211ENST00000546411 CHI3L2Q15782 390 aa16.33■□□□□ 0.21
CUX1-211ENST00000546411 ZPBP2Q6X784 338 aa16.33■□□□□ 0.21
CUX1-211ENST00000546411 ABCF3Q9NUQ8 709 aa16.33■□□□□ 0.21
CUX1-211ENST00000546411 LRP6O75581 1613 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 MAP3K7O43318 606 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 GAS2O43903 313 aaKnown RBP16.33■□□□□ 0.2
CUX1-211ENST00000546411 SMIM24O75264 130 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 TRPA1O75762 1119 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 ADSSP30520 456 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 ADCYAP1R1P41586 468 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 PPM1FP49593 454 aaPredicted RBP16.33■□□□□ 0.2
CUX1-211ENST00000546411 MCL1Q07820 350 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 MORF4L2Q15014 288 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 DBN1Q16643 649 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 FASTKD1Q53R41 847 aaKnown RBP16.33■□□□□ 0.2
CUX1-211ENST00000546411 TREML2Q5T2D2 321 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 TTC27Q6P3X3 843 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 NOTUMQ6P988 496 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 HELQQ8TDG4 1101 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 ZNF669Q96BR6 464 aaPredicted RBP16.33■□□□□ 0.2
CUX1-211ENST00000546411 PGM2Q96G03 612 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 SPON2Q9BUD6 331 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 TUBB6Q9BUF5 446 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 PLEKHA5Q9HAU0 1116 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 HEY2Q9UBP5 337 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 DNALI1O14645 258 aaPredicted RBP16.33■□□□□ 0.2
CUX1-211ENST00000546411 HMBSP08397 361 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 TNFRSF8P28908 595 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 NOMO3P69849 1222 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 QPCTQ16769 361 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 HABP4Q5JVS0 413 aaKnown RBP16.33■□□□□ 0.2
CUX1-211ENST00000546411 C9orf131Q5VYM1 1079 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 HASPINQ8TF76 798 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 MBOAT7Q96N66 472 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms