RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	ZNF143	P52747	638 aa	Predicted RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	WDR4	P57081	412 aa	Known RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	EIF3E	P60228	445 aa	Known RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	OGDH	Q02218	1023 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	PTPN11	Q06124	597 aa	Predicted RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	KCTD19	Q17RG1	926 aa	Predicted RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	TMEM63B	Q5T3F8	832 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	RFX6	Q8HWS3	928 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	SH3TC2	Q8TF17	1288 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZNF526	Q8TF50	670 aa	Predicted RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	USP6NL	Q92738	828 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	LRRC39	Q96DD0	335 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	TBCB	Q99426	244 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	INO80B	Q9C086	356 aa	Predicted RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	MTFR1L	Q9H019	292 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	BATF3	Q9NR55	127 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	PAK5	Q9P286	719 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	RABGEF1	Q9UJ41	708 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	SCAF8	Q9UPN6	1271 aa	Known RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	MYH9	P35579	1960 aa	Known RBP	13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	TRDMT1	O14717	391 aa	Known RBP	13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	IRF6	O14896	467 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	CHAD	O15335	359 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	TGDS	O95455	350 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	GH1	P01241	217 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	KRT19	P08727	400 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	SETSIP	P0DME0	302 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	GCA	P28676	217 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	RAD23B	P54727	409 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	KCTD2	Q14681	263 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZKSCAN8	Q15776	578 aa	Predicted RBP	13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	PKN2	Q16513	984 aa	Known RBP	13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	PTPN20	Q4JDL3	420 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZNF394	Q53GI3	561 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	DENND1B	Q6P3S1	775 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	XYLT1	Q86Y38	959 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	RHPN2	Q8IUC4	686 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZDHHC17	Q8IUH5	632 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	TFAP2B	Q92481	460 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	CPT1B	Q92523	772 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	LRMDA	Q9H2I8	198 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	EBF2	Q9HAK2	575 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	ERAP1	Q9NZ08	941 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	GPRC5D	Q9NZD1	345 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	NXF1	Q9UBU9	619 aa	Known RBP	13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	MCM8	Q9UJA3	840 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	ITGA11	Q9UKX5	1188 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	USP18	Q9UMW8	372 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	TELO2	Q9Y4R8	837 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	LOC285556	D6RIA3	1793 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	CLUH	O75153	1309 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	KIAA1217	Q5T5P2	1943 aa		13.65	□□□□□ -0.22
CPSF7-223	ENST00000544669	ASB14	A6NK59	587 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	GOLGA8S	H3BPF8	625 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	C2CD2L	O14523	706 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	TRUB2	O95900	331 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	IL1B	P01584	269 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	LMNA	P02545	664 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ATP5B	P06576	529 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	TGM2	P21980	687 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	FOXN2	P32314	431 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	RPL22	P35268	128 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	RBP5	P82980	135 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ROR1	Q01973	937 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	DAB2IP	Q5VWQ8	1189 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ILDR2	Q71H61	639 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ECHDC2	Q86YB7	292 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	GPC2	Q8N158	579 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	TEKT4	Q8WW24	435 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	PWWP2A	Q96N64	755 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	FAM118B	Q9BPY3	351 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ADPGK	Q9BRR6	497 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	MROH8	Q9H579	483 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZWILCH	Q9H900	591 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	PNPLA8	Q9NP80	782 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	KLHL11	Q9NVR0	708 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	XPO7	Q9UIA9	1087 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	C2CD2	Q9Y426	696 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	WDR81	Q562E7	1941 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	TRAFD1	O14545	582 aa	Predicted RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	PRPSAP2	O60256	369 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	CILP	O75339	1184 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	USP2	O75604	605 aa	Predicted RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ENDOD1	O94919	500 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	MT-ND3	P03897	115 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	EDN1	P05305	212 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZSCAN5DP	P0CG00	497 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	RBP3	P10745	1247 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	ZFX	P17010	805 aa	Predicted RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	KRT4	P19013	534 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	GPD1	P21695	349 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	IREB2	P48200	963 aa	Known RBP	13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	SLC8A3	P57103	927 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	CDC42EP1	Q00587	391 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	MOGS	Q13724	837 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	DPYSL3	Q14195	570 aa		13.64	□□□□□ -0.23
CPSF7-223	ENST00000544669	TTLL4	Q14679	1199 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms