RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TTC4O95801 387 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 KRT7P08729 469 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 CYP2B6P20813 491 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 MIPP30301 263 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 YARSP54577 528 aaKnown RBP17.16■□□□□ 0.34
COL4A1-204ENST00000543140 LMNB2Q03252 620 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 GPS1Q13098 491 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 AUHQ13825 339 aaKnown RBP17.16■□□□□ 0.34
COL4A1-204ENST00000543140 GOLGA7BQ2TAP0 167 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 MORN1Q5T089 497 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 PPP1R26Q5T8A7 1209 aaPredicted RBP17.16■□□□□ 0.34
COL4A1-204ENST00000543140 NOTUMQ6P988 496 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 FNIP1Q8TF40 1166 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 SNX27Q96L92 541 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 C9orf72Q96LT7 481 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 ADAM7Q9H2U9 754 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 TREHO43280 583 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 HCRTO43612 131 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 RECQL4O94761 1208 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 PFKMP08237 780 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 MYL3P08590 195 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 DARSP14868 501 aaKnown RBP17.16■□□□□ 0.34
COL4A1-204ENST00000543140 KDELR1P24390 212 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 GABRB2P47870 512 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 VCPP55072 806 aaKnown RBP17.16■□□□□ 0.34
COL4A1-204ENST00000543140 HP1BP3Q5SSJ5 553 aaPredicted RBP17.16■□□□□ 0.34
COL4A1-204ENST00000543140 LCLAT1Q6UWP7 414 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 NT5DC4Q86YG4 428 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 ALLCQ8N6M5 410 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 KCTD6Q8NC69 237 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 MYCBPAPQ8TBZ2 947 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 GJD2Q9UKL4 321 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 NME7Q9Y5B8 376 aa17.16■□□□□ 0.34
COL4A1-204ENST00000543140 FOXO6A8MYZ6 492 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 RNF8O76064 485 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 ZNF865P0CJ78 1059 aaPredicted RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 PTPN7P35236 360 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 CDO1Q16878 200 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 TRNP1Q6NT89 227 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 CHADLQ6NUI6 762 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 HIBCHQ6NVY1 386 aaPredicted RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 FAM183BPQ6ZVS7 135 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 SESTD1Q86VW0 696 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 BBOF1Q8ND07 529 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 ACTL9Q8TC94 416 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 IPO4Q8TEX9 1081 aaKnown RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 PLEKHA5Q9HAU0 1116 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 NINJ2Q9NZG7 142 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 CTNNAL1Q9UBT7 734 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 PIN4Q9Y237 131 aaKnown RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 OTUD4Q01804 1114 aaKnown RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 TAF1CQ15572 869 aaPredicted RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 OASLQ15646 514 aaKnown RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 C15orf59Q2T9L4 293 aaPredicted RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 DRICH1Q6PGQ1 229 aaPredicted RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 ZNF473Q8WTR7 871 aaKnown RBP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 RBM15Q96T37 977 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL4A1-204ENST00000543140 TMEM109Q9BVC6 243 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 CALN1Q9BXU9 219 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 TSPYL1Q9H0U9 437 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 USP18Q9UMW8 372 aa17.15■□□□□ 0.34
COL4A1-204ENST00000543140 SMIM35A0A1B0GVV1 85 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 MBLAC1A4D2B0 266 aaPredicted RBP17.14■□□□□ 0.33
COL4A1-204ENST00000543140 STAU1O95793 577 aaKnown RBP17.14■□□□□ 0.33
COL4A1-204ENST00000543140 CYP4F22Q6NT55 531 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 PMF1Q6P1K2 205 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 TAB3Q8N5C8 712 aaPredicted RBP17.14■□□□□ 0.33
COL4A1-204ENST00000543140 OR6B3Q8NGW1 331 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 RNF39Q9H2S5 420 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 AGTP01019 485 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 CHN1P15882 459 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 PDGFRAP16234 1089 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 PSEN2P49810 448 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 GSCP56915 257 aaPredicted RBP17.14■□□□□ 0.33
COL4A1-204ENST00000543140 ZBTB6Q15916 424 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 APBB1IPQ7Z5R6 666 aaPredicted RBP17.14■□□□□ 0.33
COL4A1-204ENST00000543140 SCUBE3Q8IX30 993 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 RXFP2Q8WXD0 754 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 PEBP4Q96S96 227 aa17.14■□□□□ 0.33
COL4A1-204ENST00000543140 GMNCA6NCL1 334 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 TRAPPC3O43617 180 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 TRUB2O95900 331 aaKnown RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 ZNF157P51786 506 aaPredicted RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 ATP11AP98196 1134 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 SNX17Q15036 470 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 B4GALNT4Q76KP1 1039 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 TTC30AQ86WT1 665 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 RFX6Q8HWS3 928 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 C7orf31Q8N865 590 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 BEST2Q8NFU1 509 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 NKD2Q969F2 451 aaPredicted RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 DPEP3Q9H4B8 488 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 CNOT10Q9H9A5 744 aaKnown RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 KIAA1257Q9ULG3 409 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 DRG1Q9Y295 367 aaKnown RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 DNALI1O14645 258 aaPredicted RBP17.13■□□□□ 0.33
COL4A1-204ENST00000543140 FAM107AO95990 144 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 ITGAVP06756 1048 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 PDGFRBP09619 1106 aa17.13■□□□□ 0.33
COL4A1-204ENST00000543140 GPD1P21695 349 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms