RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MYH9P35579 1960 aaKnown RBP8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 A0A087X0T9 212 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 CCDC169A6NNP5 214 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 KRIT1O00522 736 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 RGS16O15492 202 aaPredicted RBP8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 GRIN3BO60391 1043 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 GGPS1O95749 300 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 FAM228BP0C875 321 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 UBL4AP11441 157 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 CNGA1P29973 690 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 MRPS35P82673 323 aaKnown RBP8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 MYL7Q01449 175 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 PTK2Q05397 1052 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 TMEM63BQ5T3F8 832 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ZNF449Q6P9G9 518 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 FAM47EQ6ZV65 393 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ARHGAP18Q8N392 663 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 RNF10Q8N5U6 811 aaKnown RBP8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 RDH13Q8NBN7 331 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 SLC10A4Q96EP9 437 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 GPR20Q99678 358 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ETNK1Q9HBU6 452 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 NDFIP2Q9NV92 336 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 FGFR1OP2Q9NVK5 253 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ZNFX1Q9P2E3 1918 aaKnown RBP8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 EMSYQ7Z589 1322 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 PLXNA1Q9UIW2 1896 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 FAM170AA1A519 330 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 GRID2IPA4D2P6 1211 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ZBTB42B2RXF5 422 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 RASA4BC9J798 803 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 BTBD19C9JJ37 291 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 LRRN2O75325 713 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 GLRA2P23416 452 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 VAMP7P51809 220 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 KLC1Q07866 573 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 CELF3Q5SZQ8 465 aaKnown RBP8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 EEPD1Q7L9B9 569 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 TMC3Q7Z5M5 1100 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 EXOC3L1Q86VI1 746 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 DNAAF5Q86Y56 855 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 CBWD2Q8IUF1 395 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 C7orf57Q8NEG2 295 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 BRI3BPQ8WY22 251 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ZNF653Q96CK0 615 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 OCEL1Q9H607 264 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 INIPQ9NRY2 104 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 EXOC7Q9UPT5 735 aa8.39□□□□□ -1.07
PDLIM5-221ENST00000542407 ATP8B3O60423 1300 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 TCP11X1B4DZS4 312 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 TSPAN1O60635 241 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 FBXO21O94952 628 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 EDN1P05305 212 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 C7P10643 843 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 ITGA4P13612 1032 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SKIV2L2P42285 1042 aaKnown RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 PSMC4P43686 418 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 PDE6CP51160 858 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 KLHL30Q0D2K2 578 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 MRPL28Q13084 256 aaKnown RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 ADAT2Q7Z6V5 191 aaKnown RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 LURAP1LQ8IV03 231 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 FBXO16Q8IX29 292 aaPredicted RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 GTF3C2Q8WUA4 911 aaPredicted RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 ATXN2LQ8WWM7 1075 aaKnown RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 TMEM143Q96AN5 459 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 MFSD14AQ96MC6 490 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 TCF12Q99081 682 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 UQCC2Q9BRT2 126 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 PACSIN1Q9BY11 444 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SEMA4AQ9H3S1 761 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 CDHR5Q9HBB8 845 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 APEX2Q9UBZ4 518 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 DAAM1Q9Y4D1 1078 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 USP15Q9Y4E8 981 aaPredicted RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 STYXL1Q9Y6J8 313 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 PDHXO00330 501 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 ABLIM1O14639 778 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SNX3O60493 162 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SNX2O60749 519 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SUN1O94901 812 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 PIGRP01833 764 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SP100P23497 879 aaPredicted RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 MAN1A1P33908 653 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 CENPAP49450 140 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SIM2Q14190 667 aaPredicted RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SNRNP35Q16560 246 aaKnown RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 ZNF792Q3KQV3 632 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 HSDL1Q3SXM5 330 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 BBS9Q3SYG4 887 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 MEI1Q5TIA1 1274 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 NEPROQ6NW34 567 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SNX32Q86XE0 403 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 IFNL1Q8IU54 200 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 APLFQ8IW19 511 aaPredicted RBP8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 PAF1Q8N7H5 531 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 SEPT1Q8WYJ6 367 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 STK33Q9BYT3 514 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 HAPLN2Q9GZV7 340 aa8.38□□□□□ -1.07
PDLIM5-221ENST00000542407 TMEM117Q9H0C3 514 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms