RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SNX9Q9Y5X1 595 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 CLIC4Q9Y696 253 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 MORC2Q9Y6X9 1032 aaPredicted RBP14.56□□□□□ -0.08
SS18-204ENST00000539244 PTPRDP23468 1912 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 USP24Q9UPU5 2620 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 KIAA0391O15091 583 aaKnown RBP14.55□□□□□ -0.08
SS18-204ENST00000539244 APBB3O95704 486 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 CKMP06732 381 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 PFKLP17858 780 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 IFNAR2P48551 515 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 DMC1Q14565 340 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 CCDC142Q17RM4 750 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 SOWAHAQ2M3V2 549 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 N4BP2L1Q5TBK1 243 aaPredicted RBP14.55□□□□□ -0.08
SS18-204ENST00000539244 RRAGBQ5VZM2 374 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 KIAA1958Q8N8K9 716 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 CCDC26Q8TAB7 109 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 SPATA17Q96L03 361 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 CYP2S1Q96SQ9 504 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 CBWD1Q9BRT8 395 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 MTMR12Q9C0I1 747 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 PDE11AQ9HCR9 933 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 TRPC7Q9HCX4 862 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 TBC1D7Q9P0N9 293 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 ARHGAP26Q9UNA1 814 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 WNT6Q9Y6F9 365 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 CFAP47Q6ZTR5 3102 aa14.55□□□□□ -0.08
SS18-204ENST00000539244 NUP205Q92621 2012 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 C2orf78A6NCI8 922 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 HCRTO43612 131 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 RHOBTB1O94844 696 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 TXLNAP40222 546 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 PDE6CP51160 858 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 NR1H3Q13133 447 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 ELF2Q15723 593 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 VSTM1Q6UX27 236 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 C4orf50Q6ZRC1 276 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 SYCP3Q8IZU3 236 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 GPD1LQ8N335 351 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 ARL14EPQ8N8R7 260 aaPredicted RBP14.54□□□□□ -0.08
SS18-204ENST00000539244 SH3RF2Q8TEC5 729 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 KBTBD7Q8WVZ9 684 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 FAM84AQ96KN4 292 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 CLIC6Q96NY7 704 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 FGFBP2Q9BYJ0 223 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 INTS13Q9NVM9 706 aa14.54□□□□□ -0.08
SS18-204ENST00000539244 ABCA7Q8IZY2 2146 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 BCLAF3A2AJT9 711 aaKnown RBP14.53□□□□□ -0.08
SS18-204ENST00000539244 GOLGA8IPA6NC78 632 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 GOLGA8JA6NMD2 632 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 KCNK5O95279 499 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 NFATC1O95644 943 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 KRT19P08727 400 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 TMEM191BP0C7N4 346 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 HDCP19113 662 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 MYO1EQ12965 1108 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 CUL4AQ13619 759 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 KCNB1Q14721 858 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 MAPRE1Q15691 268 aaKnown RBP14.53□□□□□ -0.08
SS18-204ENST00000539244 RNF43Q68DV7 783 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 CCDC73Q6ZRK6 1079 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 C11orf74Q86VG3 221 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 RASSF3Q86WH2 238 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 SCN4BQ8IWT1 228 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 USP33Q8TEY7 942 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 ANKRD36BP1Q96IX9 119 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 CHAMP1Q96JM3 812 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 SYT15Q9BQS2 421 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 TTLL2Q9BWV7 592 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 LINC00597Q9H2U6 94 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 SMOC1Q9H4F8 434 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 CDH9Q9ULB4 789 aa14.53□□□□□ -0.08
SS18-204ENST00000539244 PTPRJQ12913 1337 aa14.52□□□□□ -0.08
SS18-204ENST00000539244 DCLK1O15075 740 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 IDEP14735 1019 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 PDCP20941 246 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 LMO2P25791 158 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 OPRD1P41143 372 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 ZXDBP98169 803 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 SURF1Q15526 300 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 GAB4Q2WGN9 574 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 TCEAL6Q6IPX3 200 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 DENND5BQ6ZUT9 1274 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 OR5B17Q8NGF7 314 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 TCEAL3Q969E4 200 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 MYLPFQ96A32 169 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 HPDLQ96IR7 371 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 PCIF1Q9H4Z3 704 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 CRTAC1Q9NQ79 661 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 PANK4Q9NVE7 773 aa14.52□□□□□ -0.09
SS18-204ENST00000539244 MAGEC2Q9UBF1 373 aaPredicted RBP14.52□□□□□ -0.09
SS18-204ENST00000539244 A0A087X0B3 334 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 VPS37CA5D8V6 355 aaPredicted RBP14.51□□□□□ -0.09
SS18-204ENST00000539244 K7EQS6 105 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 ATP2C2O75185 946 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 PRPF6O94906 941 aaKnown RBP14.51□□□□□ -0.09
SS18-204ENST00000539244 CAVIN2O95810 425 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 OLFM2O95897 454 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 KCNA4P22459 653 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 WARSP23381 471 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms