RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 SIM1P81133 766 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 ZBTB6Q15916 424 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 ENOX2Q16206 610 aaKnown RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 NFIL3Q16649 462 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 DCAF4L1Q3SXM0 396 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 ARHGAP29Q52LW3 1261 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 PMS2CLQ68D20 193 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 RAB44Q7Z6P3 723 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 C11orf74Q86VG3 221 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 SLC9A9Q8IVB4 645 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 ZC3H3Q8IXZ2 948 aaKnown RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 TRIML1Q8N9V2 468 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 PLEKHO2Q8TD55 490 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 RSPRY1Q96DX4 576 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 DDX27Q96GQ7 796 aaKnown RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 CCDC34Q96HJ3 373 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 DUSP9Q99956 384 aaKnown RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 MKNK1Q9BUB5 465 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 PCIF1Q9H4Z3 704 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 KLK14Q9P0G3 267 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 EBF1Q9UH73 591 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 HOOK1Q9UJC3 728 aaKnown RBP11.77□□□□□ -0.53
NEDD8-204ENST00000526430 EXOC7Q9UPT5 735 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 PCDH15Q96QU1 1955 aa11.77□□□□□ -0.53
NEDD8-204ENST00000526430 HECTD1Q9ULT8 2610 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TTC26A0AVF1 554 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 GOLGA8IPA6NC78 632 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TRIM49BA6NDI0 452 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 GOLGA8JA6NMD2 632 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TK2O00142 265 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 OGTO15294 1046 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 RECQL4O94761 1208 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 THP07101 528 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 CASP4P49662 377 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 NLRP12P59046 1061 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 SNRPFP62306 86 aaKnown RBP11.76□□□□□ -0.53
NEDD8-204ENST00000526430 SCAPQ12770 1279 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 LMAN2Q12907 356 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 NOLC1Q14978 699 aaKnown RBP eCLIP11.76□□□□□ -0.53
NEDD8-204ENST00000526430 ZNF423Q2M1K9 1284 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 UAP1L1Q3KQV9 507 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 DPCR1Q3MIW9 517 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TMEM196Q5HYL7 178 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 CCDC183Q5T5S1 534 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 SLFN12LQ6IEE8 588 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 IQCEQ6IPM2 695 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TTI2Q6NXR4 508 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 CAVIN1Q6NZI2 390 aaKnown RBP11.76□□□□□ -0.53
NEDD8-204ENST00000526430 CD300LGQ6UXG3 332 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 ELMOD1Q8N336 334 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 SAAL1Q96ER3 474 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 DHTKD1Q96HY7 919 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TMEM209Q96SK2 561 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 TCHPQ9BT92 498 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 MSTO1Q9BUK6 570 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 OBP2AQ9NY56 170 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 GTSE1Q9NYZ3 720 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 HSPBP1Q9NZL4 362 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 PARP2Q9UGN5 583 aa11.76□□□□□ -0.53
NEDD8-204ENST00000526430 AGO2Q9UKV8 859 aaKnown RBP11.76□□□□□ -0.53
NEDD8-204ENST00000526430 SPAARA0A1B0GVQ0 90 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 TRAPPC3O43617 180 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 CLTAP09496 248 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 TKTP29401 623 aaKnown RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 IRX4P78413 519 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 PLCB2Q00722 1185 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 SOX4Q06945 474 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 SEMA3BQ13214 749 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 TEAD2Q15562 447 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 TPGS2Q68CL5 300 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 STXBP4Q6ZWJ1 553 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 CBWD2Q8IUF1 395 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 SYCP3Q8IZU3 236 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 CHCHD4Q8N4Q1 142 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 POMGNT1Q8WZA1 660 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 CCDC47Q96A33 483 aaKnown RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 BICD1Q96G01 975 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 FAM84AQ96KN4 292 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 ZNF512Q96ME7 567 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 PPP1R10Q96QC0 940 aaKnown RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 ADPGKQ9BRR6 497 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 CCDC86Q9H6F5 360 aaKnown RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 ASAH2Q9NR71 780 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 MAFFQ9ULX9 164 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 GOLGA4Q13439 2230 aaKnown RBP11.75□□□□□ -0.53
NEDD8-204ENST00000526430 COL6A6A6NMZ7 2263 aa11.75□□□□□ -0.53
NEDD8-204ENST00000526430 SMIM28A0A1B0GU29 152 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 LACTBL1A8MY62 500 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 PATE3B3GLJ2 98 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 DCLK1O15075 740 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 SEC24AO95486 1093 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 NR3C1P04150 777 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CXCL8P10145 99 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 HARSP12081 509 aaKnown RBP11.74□□□□□ -0.53
NEDD8-204ENST00000526430 KCNE1P15382 129 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 POU5F1Q01860 360 aaKnown RBP11.74□□□□□ -0.53
NEDD8-204ENST00000526430 SPAG1Q07617 926 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 MYBPC2Q14324 1141 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 C1orf220Q5T0J3 134 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 ARMCX5Q6P1M9 558 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms