RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 PCDHA3Q9Y5H8 950 aa4.81□□□□□ -1.64
CD44-213ENST00000525209 PCDHA13Q9Y5I0 950 aa4.81□□□□□ -1.64
CD44-213ENST00000525209 NUMBLQ9Y6R0 609 aa4.81□□□□□ -1.64
CD44-213ENST00000525209 EIF4G3O43432 1585 aaKnown RBP4.81□□□□□ -1.64
CD44-213ENST00000525209 ARAP1Q96P48 1450 aa4.81□□□□□ -1.64
CD44-213ENST00000525209 IFT140Q96RY7 1462 aa4.81□□□□□ -1.64
CD44-213ENST00000525209 PRDM2Q13029 1718 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 NUDT19A8MXV4 375 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PSMD14O00487 310 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 MAN2B1O00754 1011 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SCDO00767 359 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 IKBKBO14920 756 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PGRMC2O15173 223 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 LRG1P02750 347 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PDHBP11177 359 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 UBL4AP11441 157 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 COL6A2P12110 1019 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TMEM11P17152 192 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 EPHA8P29322 1005 aaPredicted RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 PSMC2P35998 433 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 MCAMP43121 646 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 FNTBP49356 437 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 HNMTP50135 292 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 HDAC4P56524 1084 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TGFB2P61812 414 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PSMC6P62333 389 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 CCT2P78371 535 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 CCNA1P78396 465 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SATB1Q01826 763 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 RPA4Q13156 261 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SNW1Q13573 536 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 TNFAIP1Q13829 316 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SPIDRQ14159 915 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TRIM25Q14258 630 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 TRIM71Q2Q1W2 868 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 PRICKLE4Q2TBC4 344 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 FAXCQ5TGI0 409 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 RRAGBQ5VZM2 374 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PSAPL1Q6NUJ1 521 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 CAVIN1Q6NZI2 390 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 WDR93Q6P2C0 686 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TRAT1Q6PIZ9 186 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 MEX3BQ6ZN04 569 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 MON1AQ86VX9 555 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 AGGF1Q8N302 714 aaeCLIP4.8□□□□□ -1.64
CD44-213ENST00000525209 HDDC3Q8N4P3 179 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SH2D3CQ8N5H7 860 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 CELF5Q8N6W0 485 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 POMGNT2Q8NAT1 580 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 DRAXINQ8NBI3 349 aaPredicted RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 DNAJB8Q8NHS0 232 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 NEK9Q8TD19 979 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 FAM216AQ8WUB2 273 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 KBTBD7Q8WVZ9 684 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SIPA1Q96FS4 1042 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PDLIM5Q96HC4 596 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 SNX27Q96L92 541 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SAMD11Q96NU1 681 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TRAPPC9Q96Q05 1148 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 RAB3IPQ96QF0 476 aaPredicted RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 RBM15Q96T37 977 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-213ENST00000525209 FUZQ9BT04 418 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 ASPNQ9BXN1 380 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TRIM54Q9BYV2 358 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 DPH1Q9BZG8 443 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 KRT23Q9C075 422 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 FTOQ9C0B1 505 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-213ENST00000525209 REXO4Q9GZR2 422 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 ANKRD2Q9GZV1 360 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 BRD8Q9H0E9 1235 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 PDE11AQ9HCR9 933 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 SARS2Q9NP81 518 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 ZBTB40Q9NUA8 1239 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 ZNHIT6Q9NWK9 470 aaKnown RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 HSF4Q9ULV5 492 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 EXOC7Q9UPT5 735 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 TRAF3IP3Q9Y228 551 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 KLHL20Q9Y2M5 609 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 DERAQ9Y315 318 aa4.8□□□□□ -1.64
CD44-213ENST00000525209 CAB39Q9Y376 341 aaPredicted RBP4.8□□□□□ -1.64
CD44-213ENST00000525209 MYPNQ86TC9 1320 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 SYNGAP1Q96PV0 1343 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 A0A1W2PQ09 198 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 LACTBL1A8MY62 500 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 C1QTNF9BB2RNN3 333 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 SGK1O00141 431 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 WDR46O15213 610 aaKnown RBP4.79□□□□□ -1.64
CD44-213ENST00000525209 TP73O15350 636 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 CCP110O43303 1012 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 ADAM23O75077 832 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 SIN3BO75182 1162 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 ENTPD3O75355 529 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 E2F6O75461 281 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 TRIM16O95361 564 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 GCNT3O95395 438 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 GGPS1O95749 300 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 CD3EP07766 207 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 FURINP09958 794 aa4.79□□□□□ -1.64
CD44-213ENST00000525209 GSPT1P15170 499 aaKnown RBP4.79□□□□□ -1.64
CD44-213ENST00000525209 FERP16591 822 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms