RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 SBK3P0C264 359 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 VCAM1P19320 739 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 MALP21145 153 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 EDNRBP24530 442 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 SLC6A4P31645 630 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 PLA2G5P39877 138 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 CACNA2D1P54289 1103 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 SIM1P81133 766 aaPredicted RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 MRPS21P82921 87 aaKnown RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 HLXQ14774 488 aaPredicted RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 SF3B3Q15393 1217 aaKnown RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 KHDC1Q4VXA5 237 aaKnown RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 MICALCLQ6ZW33 695 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 CFAP52Q8N1V2 620 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 BOLLQ8N9W6 283 aaKnown RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 SLC17A8Q8NDX2 589 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 SNX19Q92543 992 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 KAT5Q92993 513 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 SCAMP4Q969E2 229 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 TMEM125Q96AQ2 219 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 PGBD1Q96JS3 809 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 PDLIM2Q96JY6 352 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 KLHL32Q96NJ5 620 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 BBC3Q96PG8 261 aaPredicted RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 TLR10Q9BXR5 811 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 BRD9Q9H8M2 597 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 HOMER2Q9NSB8 354 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 COL5A2P05997 1499 aaPredicted RBP4.04□□□□□ -1.76
VPS13B-209ENST00000521559 CRB1P82279 1406 aa4.04□□□□□ -1.76
VPS13B-209ENST00000521559 TNKSO95271 1327 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 IGSF1Q8N6C5 1336 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 CCER2I3L3R5 266 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 MASP2O00187 686 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 EXOC5O00471 708 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 MPPED1O15442 326 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 U2AF1L5P0DN76 240 aaPredicted RBP4.03□□□□□ -1.76
VPS13B-209ENST00000521559 NXPH1P58417 271 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 U2AF1Q01081 240 aaKnown RBP eCLIP4.03□□□□□ -1.76
VPS13B-209ENST00000521559 PTPRRQ15256 657 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 CCDC184Q52MB2 194 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 CCDC93Q567U6 631 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 KAZNQ674X7 775 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 SULT6B1Q6IMI4 303 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 VWA1Q6PCB0 445 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 SLC4A10Q6U841 1118 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 RAPGEF4Q8WZA2 1011 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 GPATCH3Q96I76 525 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 FBXL20Q96IG2 436 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 TRIB1Q96RU8 372 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 DMRTA2Q96SC8 542 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 VRK1Q99986 396 aaPredicted RBP4.03□□□□□ -1.76
VPS13B-209ENST00000521559 SPATA5L1Q9BVQ7 753 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 WDCPQ9H6R7 721 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 FOXJ2Q9P0K8 574 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 ABCC6O95255 1503 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 CDK12Q9NYV4 1490 aaPredicted RBP4.03□□□□□ -1.76
VPS13B-209ENST00000521559 USP54Q70EL1 1684 aa4.03□□□□□ -1.76
VPS13B-209ENST00000521559 PROM1O43490 865 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 TRIAP1O43715 76 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 PROP1O75360 226 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 ZFPL1O95159 310 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 HMOX1P09601 288 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 FXR1P51114 621 aaKnown RBP eCLIP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 SOX10P56693 466 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 ITIH3Q06033 890 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 SNAPC2Q13487 334 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 WDR43Q15061 677 aaKnown RBP eCLIP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 CD300EQ496F6 205 aaPredicted RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 AMOTQ4VCS5 1084 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 PLEKHO1Q53GL0 409 aaPredicted RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 TMEM240Q5SV17 173 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 KIAA0895LQ68EN5 471 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 TAPT1Q6NXT6 567 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 PDPRQ8NCN5 879 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 B3GALNT2Q8NCR0 500 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 PNISRQ8TF01 805 aaKnown RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 FAM167AQ96KS9 214 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 SMAD5Q99717 465 aaKnown RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 CNPPD1Q9BV87 410 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 ASPSCR1Q9BZE9 553 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 PNNQ9H307 717 aaKnown RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 KMT5AQ9NQR1 393 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 ADARB2Q9NS39 739 aaKnown RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 SEMA4GQ9NTN9 838 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 CTTNBP2NLQ9P2B4 639 aa4.02□□□□□ -1.77
VPS13B-209ENST00000521559 COL14A1Q05707 1796 aaKnown RBP4.02□□□□□ -1.77
VPS13B-209ENST00000521559 SALL3Q9BXA9 1300 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 LMO7Q8WWI1 1683 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 COL3A1P02461 1466 aaPredicted RBP4.01□□□□□ -1.77
VPS13B-209ENST00000521559 F2RL2O00254 374 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 POLRMTO00411 1230 aaKnown RBP4.01□□□□□ -1.77
VPS13B-209ENST00000521559 SUN1O94901 812 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 IGLV2-14P01704 120 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 GNAI2P04899 355 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 GJB1P08034 283 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 PDCP20941 246 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 GATA3P23771 443 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 PRKAR2BP31323 418 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 GRIA3P42263 894 aa4.01□□□□□ -1.77
VPS13B-209ENST00000521559 PIK3CGP48736 1102 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms