RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 IGKV6D-41A0A0C4DH26 115 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 FOXO6A8MYZ6 492 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 FCHO1O14526 889 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ATP9BO43861 1147 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ATP9AO75110 1047 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ABHD2P08910 425 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ZCCHC18P0CG32 403 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 RBP5P82980 135 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 KPNB1Q14974 876 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 BOLA3Q53S33 107 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 TMEM161BQ8NDZ6 487 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 BEST2Q8NFU1 509 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SEMA4DQ92854 862 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 UPF3AQ9H1J1 476 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ZDHHC18Q9NUE0 388 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 IPO11Q9UI26 975 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 LIASO43766 372 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SUPT20HL2P0C7V6 817 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ITGB5P18084 799 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 DSG1Q02413 1049 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 RIPK1Q13546 671 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 TBCCQ15814 346 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 IER5Q5VY09 327 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 AGAP3Q96P47 875 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 KCNK16Q96T55 309 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SNX9Q9Y5X1 595 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 NEMP1O14524 444 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 MGRN1O60291 552 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 COPAP53621 1224 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 MRPS9P82933 396 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC34A1Q06495 639 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 NME3Q13232 169 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 TMED1Q13445 227 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 BMPR2Q13873 1038 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 PDE1CQ14123 709 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 STILQ15468 1287 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 CNGA3Q16281 694 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 PDK4Q16654 411 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 ZDHHC24Q6UX98 284 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 PIGWQ7Z7B1 504 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 RSPH3Q86UC2 560 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 DCPSQ96C86 337 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 TRPV6Q9H1D0 765 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 STAP1Q9ULZ2 295 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 USP18Q9UMW8 372 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 INPP5FQ9Y2H2 1132 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 PPP1R12AO14974 1030 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 BNIP1Q12981 228 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 EFHC2Q5JST6 749 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 PRPF31Q8WWY3 499 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 ZBTB45Q96K62 511 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 SLITRK1Q96PX8 696 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 NT5C1AQ9BXI3 368 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 FHDC1Q9C0D6 1143 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM49BQ9NUQ9 324 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 SAE1Q9UBE0 346 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 TAGLN3Q9UI15 199 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 R3HDM2Q9Y2K5 976 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC4A7Q9Y6M7 1214 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 AIM2O14862 343 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 IL18RAPO95256 599 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 GNAT1P11488 350 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 TAS2R40P59535 323 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 OCRLQ01968 901 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 FAAP100Q0VG06 881 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 TMEM132DQ14C87 1099 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 DALRD3Q5D0E6 543 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 RWDD4Q6NW29 188 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 RAB44Q7Z6P3 723 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 CCDC97Q96F63 343 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 CCDC68Q9H2F9 335 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 GPATCH2LQ9NWQ4 482 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 ARMCX1Q9P291 453 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 A8MUI8 341 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 H0YGN5 161 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 ADCY3O60266 1144 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 ITGB3P05106 788 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 RAP1GAPP47736 663 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 DCAF12L1Q5VU92 463 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 LLGL2Q6P1M3 1020 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 DPP9Q86TI2 863 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 TRABD2AQ86V40 505 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 WDR49Q8IV35 697 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 C12orf56Q8IXR9 622 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 SAMD3Q8N6K7 520 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 FITM2Q8N6M3 262 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 OXNAD1Q96HP4 312 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 APOPT1Q96IL0 206 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM84AQ96KN4 292 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 XAB2Q9HCS7 855 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 LRCH1Q9Y2L9 728 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 AFG3L2Q9Y4W6 797 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 NFS1Q9Y697 457 aa8.76□□□□□ -1.01
LIMCH1-216ENST00000512820 C5P01031 1676 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 KBTBD13C9JR72 458 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 HUS1O60921 280 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 ENTPD5O75356 428 aa8.75□□□□□ -1.01
LIMCH1-216ENST00000512820 HSPA8P11142 646 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms