RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 FBXO4Q9UKT5 387 aa19.16■□□□□ 0.66
TPM3-220ENST00000509601 EP300Q09472 2414 aaPredicted RBP19.16■□□□□ 0.66
TPM3-220ENST00000509601 LAMTOR5O43504 91 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 PHACTR2O75167 634 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 CDH8P55286 799 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 TNK2Q07912 1038 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 MTAPQ13126 283 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 MAPRE1Q15691 268 aaKnown RBP19.15■□□□□ 0.66
TPM3-220ENST00000509601 ZNF528Q3MIS6 628 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 MDH1BQ5I0G3 518 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 TXNDC11Q6PKC3 985 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 TMC2Q8TDI7 906 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 MRPS31Q92665 395 aaKnown RBP19.15■□□□□ 0.66
TPM3-220ENST00000509601 SYAP1Q96A49 352 aaPredicted RBP19.15■□□□□ 0.66
TPM3-220ENST00000509601 CYP2S1Q96SQ9 504 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 CHRDQ9H2X0 955 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 GKN1Q9NS71 199 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 TDP1Q9NUW8 608 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 UXTQ9UBK9 157 aaPredicted RBP19.15■□□□□ 0.66
TPM3-220ENST00000509601 MAPK8IP1Q9UQF2 711 aa19.15■□□□□ 0.66
TPM3-220ENST00000509601 FANCMQ8IYD8 2048 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 AVPR1AP37288 418 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 GRIK1P39086 918 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 KPNA1P52294 538 aaPredicted RBP19.14■□□□□ 0.65
TPM3-220ENST00000509601 USP46P62068 366 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 TNNC1P63316 161 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 PLCB2Q00722 1185 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 CYP27A1Q02318 531 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 CSTF1Q05048 431 aaKnown RBP19.14■□□□□ 0.65
TPM3-220ENST00000509601 BIRC3Q13489 604 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 NCOA4Q13772 614 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 GAS6Q14393 721 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 KCNB1Q14721 858 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 NFIL3Q16649 462 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 ZACNQ401N2 412 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 NELL1Q92832 810 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 SLC22A12Q96S37 553 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 B3GNT5Q9BYG0 378 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 SDCBP2Q9H190 292 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 SEMA4AQ9H3S1 761 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 TMEM30AQ9NV96 361 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 GCNT4Q9P109 453 aa19.14■□□□□ 0.65
TPM3-220ENST00000509601 GREB1Q4ZG55 1949 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 A8MXQ7 604 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 SPECC1L-ADORA2AF8WAN1 911 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 IKBKBO14920 756 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 CALUO43852 315 aaPredicted RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 CACNA2D1P54289 1103 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 MCCD1P59942 119 aaPredicted RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 BECN1Q14457 450 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 ZNF268Q14587 947 aaPredicted RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 CEP135Q66GS9 1140 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 SV2AQ7L0J3 742 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 RALGPS2Q86X27 583 aaPredicted RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 GUF1Q8N442 669 aaKnown RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 CCDC47Q96A33 483 aaKnown RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 MSANTD3Q96H12 275 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 C8orf48Q96LL4 319 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 CEP295NLQ96MC4 621 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 SMYD3Q9H7B4 428 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 HPS4Q9NQG7 708 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 THG1LQ9NWX6 298 aaKnown RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 OBSL1O75147 1896 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 PTPRDP23468 1912 aa19.13■□□□□ 0.65
TPM3-220ENST00000509601 ZNF638Q14966 1978 aaKnown RBP19.13■□□□□ 0.65
TPM3-220ENST00000509601 GVINP1Q7Z2Y8 2422 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 ANAPC1Q9H1A4 1944 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 OTOL1A6NHN0 477 aaPredicted RBP19.12■□□□□ 0.65
TPM3-220ENST00000509601 MAPK13O15264 365 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 AKAP3O75969 853 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 KIF20AO95235 890 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 CTHP32929 405 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 SGSM1Q2NKQ1 1148 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 ZNF699Q32M78 642 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 ZNF667Q5HYK9 610 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 TSSK4Q6SA08 328 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 DENND5BQ6ZUT9 1274 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 PAQR9Q6ZVX9 377 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 FMR1NBQ8N0W7 255 aaPredicted RBP19.12■□□□□ 0.65
TPM3-220ENST00000509601 ENGASEQ8NFI3 743 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 TTLL2Q9BWV7 592 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 PRMT8Q9NR22 394 aaPredicted RBP19.12■□□□□ 0.65
TPM3-220ENST00000509601 FRMD4BQ9Y2L6 1034 aa19.12■□□□□ 0.65
TPM3-220ENST00000509601 PATJQ8NI35 1801 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 GPR179Q6PRD1 2367 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 C2orf78A6NCI8 922 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 F8VP50 259 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 CLDN5O00501 218 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 LMNAP02545 664 aaKnown RBP19.11■□□□□ 0.65
TPM3-220ENST00000509601 TDGF1P13385 188 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 RAP1GAPP47736 663 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 NUCB2P80303 420 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 ITPRIPL2Q3MIP1 535 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 TRIM68Q6AZZ1 485 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 C1orf228Q6PIY5 440 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 ADSSL1Q8N142 457 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 B3GALNT2Q8NCR0 500 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 CHFRQ96EP1 664 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 ZNF518BQ9C0D4 1074 aa19.11■□□□□ 0.65
TPM3-220ENST00000509601 KIF9Q9HAQ2 790 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms