RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MYO18AQ92614 2054 aaKnown RBP17.76■□□□□ 0.43
VIM-208ENST00000497849 TRAV19A0A0A6YYK7 116 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 SGK1O00141 431 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 OGTO15294 1046 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 OPHN1O60890 802 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 PRPF40AO75400 957 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 NOL4O94818 638 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 CKMP06732 381 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 DPP6P42658 865 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 ATXN3P54252 364 aaPredicted RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 MRPS21P82921 87 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 MESP2Q0VG99 397 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 KYAT1Q16773 422 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 DDR2Q16832 855 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 DCP1BQ8IZD4 617 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 ARL14EPQ8N8R7 260 aaPredicted RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 IL17RCQ8NAC3 791 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 TXNDC5Q8NBS9 432 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 OR2I1PQ8NGU4 316 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 SH3RF2Q8TEC5 729 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 LRRC15Q8TF66 581 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 BICD1Q96G01 975 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 TRMT2BQ96GJ1 504 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 MMTAG2Q9BU76 263 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 CCSER1Q9C0I3 900 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 KCNG1Q9UIX4 513 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 CPSF3Q9UKF6 684 aaKnown RBP17.75■□□□□ 0.43
VIM-208ENST00000497849 STK24Q9Y6E0 443 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 ASXL3Q9C0F0 2248 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 MYOFQ9NZM1 2061 aa17.75■□□□□ 0.43
VIM-208ENST00000497849 C2orf78A6NCI8 922 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 TCF3P15923 654 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 HOXD12P35452 270 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 LIG4P49917 911 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 NCKAP1LP55160 1127 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 ZXDBP98169 803 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 GFPT1Q06210 699 aaPredicted RBP17.74■□□□□ 0.43
VIM-208ENST00000497849 ST3GAL1Q11201 340 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 TMEM132DQ14C87 1099 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 ANKRD1Q15327 319 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 DUOXA1Q1HG43 343 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 KRT79Q5XKE5 535 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 CD302Q8IX05 232 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 MINDY1Q8N5J2 469 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 ADAMTS14Q8WXS8 1223 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 KCNN1Q92952 543 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 CAMK1GQ96NX5 476 aa17.74■□□□□ 0.43
VIM-208ENST00000497849 CCDC86Q9H6F5 360 aaKnown RBP17.74■□□□□ 0.43
VIM-208ENST00000497849 UXTQ9UBK9 157 aaPredicted RBP17.74■□□□□ 0.43
VIM-208ENST00000497849 PTPRBP23467 1997 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 A0A0B4J269 797 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 KLF8O95600 359 aaPredicted RBP17.73■□□□□ 0.43
VIM-208ENST00000497849 NFATC1O95644 943 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 SERPINF2P08697 491 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 CYP2F1P24903 491 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 TAF6P49848 677 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 HNRNPDQ14103 355 aaKnown RBP17.73■□□□□ 0.43
VIM-208ENST00000497849 IL17AQ16552 155 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 EMC10Q5UCC4 262 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 LMBRD2Q68DH5 695 aaPredicted RBP17.73■□□□□ 0.43
VIM-208ENST00000497849 CCNI2Q6ZMN8 369 aaPredicted RBP17.73■□□□□ 0.43
VIM-208ENST00000497849 CEP76Q8TAP6 659 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 MDM1Q8TC05 714 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 HNRNPLLQ8WVV9 542 aaKnown RBP17.73■□□□□ 0.43
VIM-208ENST00000497849 BACH2Q9BYV9 841 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 FOXP1Q9H334 677 aaPredicted RBP17.73■□□□□ 0.43
VIM-208ENST00000497849 ZDHHC4Q9NPG8 344 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 ARHGAP26Q9UNA1 814 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 DERAQ9Y315 318 aa17.73■□□□□ 0.43
VIM-208ENST00000497849 URB1O60287 2271 aaKnown RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 HNRNPDLO14979 420 aaKnown RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 ADAM23O75077 832 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 PIGRP01833 764 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 TIE1P35590 1138 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 SLC6A11P48066 632 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 TRIP6Q15654 476 aaKnown RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 NFE2Q16621 373 aaPredicted RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 SLC39A4Q6P5W5 647 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 DEFB119Q8N690 84 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 PNPLA1Q8N8W4 532 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 LEO1Q8WVC0 666 aaPredicted RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 HMGB4Q8WW32 186 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 MSTO1Q9BUK6 570 aa17.72■□□□□ 0.43
VIM-208ENST00000497849 POLMQ9NP87 494 aaPredicted RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 DNAAF2Q9NVR5 837 aaKnown RBP17.72■□□□□ 0.43
VIM-208ENST00000497849 BCCIPQ9P287 314 aaKnown RBP eCLIP17.72■□□□□ 0.43
VIM-208ENST00000497849 NPHP3-ACAD11A0A0J9YXS1 232 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 KPNA7A9QM74 516 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 ARHGAP33O14559 1287 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 SH3BP5O60239 455 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 GJB3O75712 270 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 CYP17A1P05093 508 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 FTH1P19P0C7X4 201 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 HDCP19113 662 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 KIR2DL1P43626 348 aaPredicted RBP17.71■□□□□ 0.43
VIM-208ENST00000497849 TRAPPC10P48553 1259 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 RPL10AP62906 217 aaKnown RBP17.71■□□□□ 0.43
VIM-208ENST00000497849 TSPY1Q01534 308 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 CCDC142Q17RM4 750 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 SYT2Q8N9I0 419 aaPredicted RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms