RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	MX1	P20591	662 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	MCC	P23508	829 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	DNAJB1	P25685	340 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	SLC16A2	P36021	539 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	NRG1	Q02297	640 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	ADAM15	Q13444	863 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	GPM6B	Q13491	265 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	TOR2A	Q5JU69	321 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	CATSPERE	Q5SY80	951 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	CC2D1A	Q6P1N0	951 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	ADGRD2	Q7Z7M1	963 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	PRR18	Q8N4B5	295 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	BEND7	Q8N7W2	519 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	FAM181A	Q8N9Y4	354 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	FAM156A	Q8NDB6	213 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	UHMK1	Q8TAS1	419 aa	Known RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	TBC1D32	Q96NH3	1257 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	ACAP3	Q96P50	834 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	SLC2A13	Q96QE2	648 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	SEZ6L	Q9BYH1	1024 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	NACAP1	Q9BZK3	213 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	RNF38	Q9H0F5	515 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	PCIF1	Q9H4Z3	704 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	NSUN3	Q9H649	340 aa	Known RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	SP110	Q9HB58	689 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	ZNF287	Q9HBT7	754 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	PLCB1	Q9NQ66	1216 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	NOP53	Q9NZM5	478 aa	Known RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	COL20A1	Q9P218	1284 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	GULP1	Q9UBP9	304 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	CD207	Q9UJ71	328 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	CDH22	Q9UJ99	828 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	STX8	Q9UNK0	236 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	USP15	Q9Y4E8	981 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS52-222	ENST00000495981		R4GN57	208 aa		4.88	□□□□□ -1.63
VPS52-222	ENST00000495981	HMX2	A2RU54	273 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	TSPY2	A6NKD2	308 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	NDUFS2	O75306	463 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	TUSC2	O75896	110 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	BAIAP3	O94812	1187 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	GLP2R	O95838	553 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CXCL10	P02778	98 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CLEC2L	P0C7M8	214 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	SP100	P23497	879 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CD40	P25942	277 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ICAM3	P32942	547 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	RFC2	P35250	354 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CPT1A	P50416	773 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	MANF	P55145	182 aa	Known RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	RPS6	P62753	249 aa	Known RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	HTRA4	P83105	476 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ARHGAP1	Q07960	439 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ADCY1	Q08828	1119 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	SPIRE1	Q08AE8	756 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ZNF543	Q08ER8	600 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	IK	Q13123	557 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	BAAT	Q14032	418 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	PPP2R5B	Q15173	497 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	LLGL1	Q15334	1064 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	EPHA7	Q15375	998 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CCDC96	Q2M329	555 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	TIGD5	Q53EQ6	642 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CT83	Q5H943	113 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ZBTB41	Q5SVQ8	909 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	NFRKB	Q6P4R8	1299 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CCDC62	Q6P9F0	684 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	SRGAP1	Q7Z6B7	1085 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	THAP5	Q7Z6K1	395 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	SESTD1	Q86VW0	696 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	SKAP1	Q86WV1	359 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	TICAM2	Q86XR7	235 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	LYSMD2	Q8IV50	215 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ZNF444	Q8N0Y2	327 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ENAH	Q8N8S7	591 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	SMRP1	Q8NCR6	262 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	VPS37A	Q8NEZ2	397 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	VN1R2	Q8NFZ6	395 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	OR6J1	Q8NGC5	347 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	FEZF2	Q8TBJ5	459 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CHURC1	Q8WUH1	139 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	KAT2B	Q92831	832 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	UBE2F	Q969M7	185 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	FAM227B	Q96M60	508 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	FAM193B	Q96PV7	902 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	TMEM47	Q9BQJ4	181 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	MTG1	Q9BT17	334 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	G6PC3	Q9BUM1	346 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	AP5M1	Q9H0R1	490 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	QRSL1	Q9H0R6	528 aa	Known RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CHMP4B	Q9H444	224 aa	Known RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	EPB41L1	Q9H4G0	881 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	C7orf69	Q9H7B7	122 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ACSS2	Q9NR19	701 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	MARCH2	Q9P0N8	246 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ZSWIM5	Q9P217	1185 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	EBF1	Q9UH73	591 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	DUSP13	Q9UII6	198 aa		4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	ISY1	Q9ULR0	285 aa	Known RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS52-222	ENST00000495981	CCDC171	Q6TFL3	1326 aa		4.87	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 42 ms