RNA–Protein interactions for RNA: ENST00000495630.1

TMEM53-209, Transcript of transmembrane protein 53, human

TSL 2

Gene TMEM53, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM53-209	ENST00000495630	RASSF3	Q86WH2	238 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	SFR1	Q86XK3	245 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	KIAA1958	Q8N8K9	716 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	TTC16	Q8NEE8	873 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	CXorf38	Q8TB03	319 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	CEP295NL	Q96MC4	621 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	ACCS	Q96QU6	501 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	MRPL44	Q9H9J2	332 aa	Known RBP	18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	TMEM9B	Q9NQ34	198 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	ITGA11	Q9UKX5	1188 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	INVS	Q9Y283	1065 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	SNX9	Q9Y5X1	595 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	ANK1	P16157	1881 aa		18.82	■□□□□ 0.6
TMEM53-209	ENST00000495630	TSC2	P49815	1807 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	LAMA1	P25391	3075 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	C2orf78	A6NCI8	922 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	TULP1	O00294	542 aa	Predicted RBP	18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	GART	P22102	1010 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	WNT7B	P56706	349 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	L1TD1	Q5T7N2	865 aa	Known RBP	18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	SH3PXD2A	Q5TCZ1	1133 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	UNQ6494/PRO21346	Q6UXR6	183 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	C4orf50	Q6ZRC1	276 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	SCN4B	Q8IWT1	228 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	KDF1	Q8NAX2	398 aa	Predicted RBP	18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	TMX3	Q96JJ7	454 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	SPATA17	Q96L03	361 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	CNOT6L	Q96LI5	555 aa	Known RBP	18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	WASF3	Q9UPY6	502 aa		18.81	■□□□□ 0.6
TMEM53-209	ENST00000495630	DENND4C	Q5VZ89	1909 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	C1QTNF9B	B2RNN3	333 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	CDX4	O14627	284 aa	Predicted RBP	18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	C1QTNF9	P0C862	333 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	GAP43	P17677	238 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	OPRD1	P41143	372 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	MRPS21	P82921	87 aa	Known RBP	18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	KCNA1	Q09470	495 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	RABEP1	Q15276	862 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	CRY1	Q16526	586 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	SOWAHA	Q2M3V2	549 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	C2orf27A	Q580R0	203 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	VSTM1	Q6UX27	236 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	OSTM1	Q86WC4	334 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	ADGRF2	Q8IZF7	708 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	RBAK	Q9NYW8	714 aa	Predicted RBP	18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	MAGEC2	Q9UBF1	373 aa	Predicted RBP	18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	STK17A	Q9UEE5	414 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	MMP17	Q9ULZ9	603 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	PCDHB13	Q9Y5F0	798 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	CEP295	Q9C0D2	2601 aa		18.8	■□□□□ 0.6
TMEM53-209	ENST00000495630	ZNF638	Q14966	1978 aa	Known RBP	18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	MYMK	A6NI61	221 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	KRT19	P08727	400 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	PPP3CC	P48454	512 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	IRX4	P78413	519 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	ZNF252P-AS1	Q0IIN9	211 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	SF3A1	Q15459	793 aa	Known RBP	18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	MAPRE1	Q15691	268 aa	Known RBP	18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	LARP1B	Q659C4	914 aa	Known RBP	18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	SCARA3	Q6AZY7	606 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	ANO7	Q6IWH7	933 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	CYP2U1	Q7Z449	544 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	LIMS2	Q7Z4I7	341 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	BRAP	Q7Z569	592 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	ADGRG2	Q8IZP9	1017 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	ZSWIM2	Q8NEG5	633 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	SAAL1	Q96ER3	474 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	TPSD1	Q9BZJ3	242 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	EHD2	Q9NZN4	543 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	TRPM5	Q9NZQ8	1165 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	CCDC39	Q9UFE4	941 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	CDH9	Q9ULB4	789 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	ZMIZ1	Q9ULJ6	1067 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	R3HCC1	Q9Y3T6	440 aa	Known RBP	18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	EML5	Q05BV3	1969 aa		18.79	■□□□□ 0.6
TMEM53-209	ENST00000495630	ALDH1A2	O94788	518 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	SEC13	P55735	322 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	ZXDB	P98169	803 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	FOXC1	Q12948	553 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	MYO1E	Q12965	1108 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	HSF5	Q4G112	596 aa	Predicted RBP	18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	SYCP3	Q8IZU3	236 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	ABCA7	Q8IZY2	2146 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	CCDC33	Q8N5R6	958 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	OLIG1	Q8TAK6	271 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	DNAJC19	Q96DA6	116 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	EPSTI1	Q96J88	318 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	PDE11A	Q9HCR9	933 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	EVL	Q9UI08	416 aa	Predicted RBP	18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	SIX4	Q9UIU6	781 aa		18.78	■□□□□ 0.6
TMEM53-209	ENST00000495630	FRY	Q5TBA9	3013 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630		A0A0A0MRY4	1105 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	TMEM8B	A6NDV4	472 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	LEFTY2	O00292	366 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	SLC9A3R1	O14745	358 aa	Predicted RBP	18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	HCRT	O43612	131 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	ATP2C2	O75185	946 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	BCKDHB	P21953	392 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	GRIK1	P39086	918 aa		18.77	■□□□□ 0.6
TMEM53-209	ENST00000495630	DHPS	P49366	369 aa	Predicted RBP	18.77	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms