RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CD101Q93033 1021 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 DNAJC19Q96DA6 116 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 SPATA17Q96L03 361 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 LRRC3BQ96PB8 259 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 SNX25Q9H3E2 840 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 PCIF1Q9H4Z3 704 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 MAGEF1Q9HAY2 307 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 PDE11AQ9HCR9 933 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 PARD6AQ9NPB6 346 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 TRPM5Q9NZQ8 1165 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.39□□□□□ -0.43
COL6A3-213ENST00000493475 NUP210Q8TEM1 1887 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-213ENST00000493475 DNAH14Q0VDD8 3507 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 COL4A2P08572 1712 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 ATP8B3O60423 1300 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 FRMD3A2A2Y4 597 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 DCDC2BA2VCK2 349 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 GOLGA8IPA6NC78 632 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 GOLGA8JA6NMD2 632 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 AXIN1O15169 862 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 EIF3DO15371 548 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL6A3-213ENST00000493475 RNF40O75150 1001 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 APBB3O95704 486 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 HDCP19113 662 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 TNNI1P19237 187 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 SYT1P21579 422 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 ACAT1P24752 427 aaKnown RBP12.38□□□□□ -0.43
COL6A3-213ENST00000493475 TNNC1P63316 161 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 CYP27A1Q02318 531 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 KCNA1Q09470 495 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 RESTQ13127 1097 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 PDAP1Q13442 181 aaKnown RBP12.38□□□□□ -0.43
COL6A3-213ENST00000493475 TRPC3Q13507 836 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 PREPLQ4J6C6 727 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-213ENST00000493475 PPM1JQ5JR12 505 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 DENND5BQ6ZUT9 1274 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 USP49Q70CQ1 688 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 DDX42Q86XP3 938 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL6A3-213ENST00000493475 PDILTQ8N807 584 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 LRRC15Q8TF66 581 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 CLIC6Q96NY7 704 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 SLITRK1Q96PX8 696 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 SYT15Q9BQS2 421 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 CBWD1Q9BRT8 395 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 ECT2Q9H8V3 914 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 INTS13Q9NVM9 706 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 CGNQ9P2M7 1197 aaKnown RBP12.38□□□□□ -0.43
COL6A3-213ENST00000493475 CCL26Q9Y258 94 aa12.38□□□□□ -0.43
COL6A3-213ENST00000493475 UBE4BO95155 1302 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 TSC2P49815 1807 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 GABRDO14764 452 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 ALDH1A2O94788 518 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 EPN2O95208 641 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 HSP90AA1P07900 732 aaKnown RBP12.37□□□□□ -0.43
COL6A3-213ENST00000493475 FAM163BP0C2L3 166 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 ZNF806P0C7X5 589 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 TGM1P22735 817 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 CDR1P51861 262 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 LIMK1P53667 647 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 ASIC1P78348 528 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 SRSF5Q13243 272 aaKnown RBP12.37□□□□□ -0.43
COL6A3-213ENST00000493475 USP39Q53GS9 565 aaKnown RBP12.37□□□□□ -0.43
COL6A3-213ENST00000493475 LMBRD2Q68DH5 695 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-213ENST00000493475 TRIM68Q6AZZ1 485 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 FSTL4Q6MZW2 842 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 NUDT18Q6ZVK8 323 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 SYT13Q7L8C5 426 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 TMEM150AQ86TG1 271 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 STKLD1Q8NE28 680 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 GOLGA5Q8TBA6 731 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 CHAMP1Q96JM3 812 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 PANK2Q9BZ23 570 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 DNAI2Q9GZS0 605 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 HPS4Q9NQG7 708 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 VPS45Q9NRW7 570 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 TMLHEQ9NVH6 421 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 HSPBP1Q9NZL4 362 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 ARHGAP26Q9UNA1 814 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 BOLA1Q9Y3E2 137 aa12.37□□□□□ -0.43
COL6A3-213ENST00000493475 SPTLC2O15270 562 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 STX6O43752 255 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 PHACTR2O75167 634 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 PPP6R2O75170 966 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 ADRB1P08588 477 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 DLATP10515 647 aaKnown RBP12.36□□□□□ -0.43
COL6A3-213ENST00000493475 HOXB1P14653 301 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-213ENST00000493475 TCF3P15923 654 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 WARSP23381 471 aaKnown RBP12.36□□□□□ -0.43
COL6A3-213ENST00000493475 GJA4P35212 333 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 GPR15P49685 360 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 GALK1P51570 392 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 CASP5P51878 434 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 DMWDQ09019 674 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 USP4Q13107 963 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 ZNF77Q15935 545 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 SNRNP35Q16560 246 aaKnown RBP12.36□□□□□ -0.43
COL6A3-213ENST00000493475 SOWAHAQ2M3V2 549 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 SDHAF4Q5VUM1 108 aa12.36□□□□□ -0.43
COL6A3-213ENST00000493475 TDRD10Q5VZ19 366 aaKnown RBP12.36□□□□□ -0.43
COL6A3-213ENST00000493475 FAM171BQ6P995 826 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms