RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	CHRNA4	P43681	627 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	USP11	P51784	963 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ADAM17	P78536	824 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ICA1	Q05084	483 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	DUOXA1	Q1HG43	343 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	UVSSA	Q2YD98	709 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ZC3H12B	Q5HYM0	836 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	CAPRIN2	Q6IMN6	1127 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	G2E3	Q7L622	706 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	THNSL2	Q86YJ6	484 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	DHX40	Q8IX18	779 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	SYNPO	Q8N3V7	929 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	CAMKK1	Q8N5S9	505 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	LRRN4CL	Q8ND94	238 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PIGO	Q8TEQ8	1089 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PDCD6IP	Q8WUM4	868 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	STAG1	Q8WVM7	1258 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	KCNE4	Q8WWG9	221 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	C16orf70	Q9BSU1	422 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	DHRS4	Q9BTZ2	278 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	FTHL17	Q9BXU8	183 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PRDM14	Q9GZV8	571 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	SLC25A18	Q9H1K4	315 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	MYH16	Q9H6N6	1097 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	NCOA5	Q9HCD5	579 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	SETD4	Q9NVD3	440 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	GNL3L	Q9NVN8	582 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PADI3	Q9ULW8	664 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	NUDC	Q9Y266	331 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	MRPS23	Q9Y3D9	190 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PRKAB1	Q9Y478	270 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	LAS1L	Q9Y4W2	734 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	COL4A3BP	Q9Y5P4	624 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606		U3KQE9	123 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	KNL1	Q8NG31	2342 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ELL2	O00472	640 aa	Predicted RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	DLX3	O60479	287 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	CLSTN1	O94985	981 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	EEF2	P13639	858 aa	Known RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	CD99	P14209	185 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	AKR1B1	P15121	316 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	GDI1	P31150	447 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	POLG	P54098	1239 aa	Predicted RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	OAZ1	P54368	228 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	DYNLL1	P63167	89 aa	Known RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	GSTO1	P78417	241 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	GABPA	Q06546	454 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	LTB	Q06643	244 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	PON2	Q15165	354 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	NTRK3	Q16288	839 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	ZNF484	Q5JVG2	852 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	DENND5A	Q6IQ26	1287 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	NSMF	Q6X4W1	530 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TMEM179	Q6ZVK1	233 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TRIM59	Q8IWR1	403 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	SLC34A3	Q8N130	599 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TOP6BL	Q8N6T0	577 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	FRMD1	Q8N878	549 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	BVES	Q8NE79	360 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	ING5	Q8WYH8	240 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	NINJ1	Q92982	152 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	MCRS1	Q96EZ8	462 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	C1orf159	Q96HA4	380 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TMEM169	Q96HH4	297 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	FNBP1	Q96RU3	617 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	CLSTN3	Q9BQT9	956 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	MCMBP	Q9BTE3	642 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	AARSD1	Q9BTE6	412 aa	Known RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	ASPN	Q9BXN1	380 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TPSD1	Q9BZJ3	242 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	MKRN2	Q9H000	416 aa	Known RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TMEM117	Q9H0C3	514 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TRPV5	Q9NQA5	729 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	WHRN	Q9P202	907 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	CGGBP1	Q9UFW8	167 aa	Predicted RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	EBF1	Q9UH73	591 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	BTBD3	Q9Y2F9	522 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	NOP58	Q9Y2X3	529 aa	Known RBP	4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	CDY2A	Q9Y6F7	541 aa		4.62	□□□□□ -1.67
UBR4-215	ENST00000492606	TRBV23-1	A0A0A0MS06	115 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	TRAV20	A0A0B4J274	112 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	FAM95C	A0A1B0GW59	222 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	ESYT2	A0FGR8	921 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	SHISA3	A0PJX4	238 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	SLC38A8	A6NNN8	435 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	PLD2	O14939	933 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	SART1	O43290	800 aa	Known RBP	4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	DDAH2	O95865	285 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	HMGB1	P09429	215 aa	Known RBP	4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	PABPC1	P11940	636 aa	Known RBP	4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	ALAS1	P13196	640 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	SDS	P20132	328 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	EDNRB	P24530	442 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	CTSK	P43235	329 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	GSK3A	P49840	483 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	BCAR1	P56945	870 aa		4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	BAAT	Q14032	418 aa	Predicted RBP	4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.61	□□□□□ -1.67
UBR4-215	ENST00000492606	ARL13B	Q3SXY8	428 aa		4.61	□□□□□ -1.67

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