RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CACHD1Q5VU97 1274 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 DOK6Q6PKX4 331 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 CCDC33Q8N5R6 958 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 RSAD1Q9HA92 442 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PTK7Q13308 1070 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 PNMA5Q96PV4 448 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 GOLPH3Q9H4A6 298 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 NEU2Q9Y3R4 380 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 AIM2O14862 343 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 XYLBO75191 536 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CD2BP2O95400 341 aaKnown RBP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CPSF4O95639 269 aaKnown RBP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 RUNX1T1Q06455 604 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ARID5BQ14865 1188 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 DDX42Q86XP3 938 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CGRRF1Q99675 332 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 RBBP8Q99708 897 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 OSBPL6Q9BZF3 934 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 TMEM8AQ9HCN3 771 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ERVK-7P63135 1459 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 PNPLA7Q6ZV29 1317 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 GOLGA8TH3BQL2 631 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 HNRNPRO43390 633 aaKnown RBP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 S100A5P33763 92 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 PGM1P36871 562 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 C16orf86Q6ZW13 317 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 POMGNT2Q8NAT1 580 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ETNK1Q9HBU6 452 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 UVRAGQ9P2Y5 699 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 MTSS1O43312 755 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 DAB1O75553 588 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CHGBP05060 677 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ITGALP20701 1170 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ICE2Q659A1 982 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 PRUNE1Q86TP1 453 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 DNAJC1Q96KC8 554 aaKnown RBP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 RBM15Q96T37 977 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 SENP6Q9GZR1 1112 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CLPBQ9H078 707 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 MROH8Q9H579 483 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 DSEQ9UL01 958 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 GNG14A0A1W2PPG7 69 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 PDHXO00330 501 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CTSEP14091 401 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 KRT77Q7Z794 578 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ENGASEQ8NFI3 743 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 MED8Q96G25 268 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 CAMKK2Q96RR4 588 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ECSITQ9BQ95 431 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 SHCBP1LQ9BZQ2 653 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 MIR1-1HGQ9H1L0 117 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 NPHS2Q9NP85 383 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 KCND2Q9NZV8 630 aa13.63□□□□□ -0.23
COL6A3-212ENST00000491769 ANO9A1A5B4 782 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 GYS2P54840 703 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 ARHGAP17Q68EM7 881 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 MRNIPQ6NTE8 343 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 DENND5BQ6ZUT9 1274 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 SYDE1Q6ZW31 735 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 EFL1Q7Z2Z2 1120 aaKnown RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 FAM71DQ8N9W8 422 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 N6AMT1Q9Y5N5 214 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 MSH3P20585 1137 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 ALDH9A1P49189 494 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 CUL4AQ13619 759 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 BYSLQ13895 437 aaKnown RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 CES5AQ6NT32 575 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 B3GALNT2Q8NCR0 500 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 CST8O60676 142 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 STAU1O95793 577 aaKnown RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 GSTM1P09488 218 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 PDHBP11177 359 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 HSPA9P38646 679 aaKnown RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 KIRREL3Q8IZU9 778 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 GPRASP2Q96D09 838 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 THUMPD3Q9BV44 507 aaKnown RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 CYP39A1Q9NYL5 469 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 ACOX1Q15067 660 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 C4orf33Q8N1A6 199 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 PRMT1Q99873 361 aaKnown RBP13.62□□□□□ -0.23
COL6A3-212ENST00000491769 BBS2Q9BXC9 721 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 MPP6Q9NZW5 540 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 FOXN1O15353 648 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 C16orf89Q6UX73 402 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 P3H2Q8IVL5 708 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 CNTNAP2Q9UHC6 1331 aa13.62□□□□□ -0.23
COL6A3-212ENST00000491769 NT5DC3Q86UY8 548 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 NBPF15Q8N660 670 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 MTG1Q9BT17 334 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-212ENST00000491769 POLR1DQ9Y2S0 133 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 CDK12Q9NYV4 1490 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-212ENST00000491769 MGAT4DA6NG13 374 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 TBX3O15119 743 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 STRNO43815 780 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 TCEA2Q15560 299 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 CNGA3Q16281 694 aa13.61□□□□□ -0.23
COL6A3-212ENST00000491769 TTC39BQ5VTQ0 682 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-212ENST00000491769 HMX1Q9NP08 348 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-212ENST00000491769 TRPC4Q9UBN4 977 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms