RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 AFMP43652 599 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 FAM160A1Q05DH4 1040 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 USP4Q13107 963 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 CUL4BQ13620 913 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 PKP1Q13835 747 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 BMT2Q1RMZ1 405 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 RESP18Q5W5W9 173 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 HEATR6Q6AI08 1181 aaKnown RBP14.59□□□□□ -0.07
COL6A3-211ENST00000491233 SYNPOQ8N3V7 929 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 XXYLT1Q8NBI6 393 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 TTC16Q8NEE8 873 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 CCDC127Q96BQ5 260 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 CHFRQ96EP1 664 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 SLC22A12Q96S37 553 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 MMS19Q96T76 1030 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 MRPL45Q9BRJ2 306 aaKnown RBP14.59□□□□□ -0.07
COL6A3-211ENST00000491233 SLC39A2Q9NP94 309 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 MAGEC2Q9UBF1 373 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-211ENST00000491233 USP18Q9UMW8 372 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 NME7Q9Y5B8 376 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 EML5Q05BV3 1969 aa14.59□□□□□ -0.07
COL6A3-211ENST00000491233 USP17L7P0C7H9 530 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PDIA4P13667 645 aaKnown RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 BDNFP23560 247 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 HOXC13P31276 330 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 SNRPFP62306 86 aaKnown RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 TNNC1P63316 161 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 CYP27A1Q02318 531 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 SRSF5Q13243 272 aaKnown RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 SIM2Q14190 667 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PUM1Q14671 1186 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PDGFRLQ15198 375 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 MAPRE1Q15691 268 aaKnown RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 ZNF77Q15935 545 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 RSPO4Q2I0M5 234 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 TMEM196Q5HYL7 178 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 MDH1BQ5I0G3 518 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 LAIR1Q6GTX8 287 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 FSTL4Q6MZW2 842 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PKN3Q6P5Z2 889 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 VSTM1Q6UX27 236 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 DGLUCYQ7Z3D6 616 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 LONP2Q86WA8 852 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 GRAMD1CQ8IYS0 662 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 GPR161Q8N6U8 529 aaKnown RBP14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PCED1BQ96HM7 432 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PARD6AQ9NPB6 346 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 DLL3Q9NYJ7 618 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 DCHS1Q96JQ0 3298 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 DMXL1Q9Y485 3027 aa14.58□□□□□ -0.08
COL6A3-211ENST00000491233 PVALEFA0A1B0GWK0 134 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 C2orf78A6NCI8 922 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 CST3P01034 146 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-211ENST00000491233 ANXA13P27216 316 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 GRIK1P39086 918 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 IFNAR2P48551 515 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 LMNB2Q03252 620 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 KCNB1Q14721 858 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 C12orf56Q8IXR9 622 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 CPA6Q8N4T0 437 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 ARL14EPQ8N8R7 260 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-211ENST00000491233 FSIP1Q8NA03 581 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 SPRYD3Q8NCJ5 442 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 OR6B3Q8NGW1 331 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 MYCBPAPQ8TBZ2 947 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 CYP2S1Q96SQ9 504 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 GZF1Q9H116 711 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-211ENST00000491233 SNX25Q9H3E2 840 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 GCNT4Q9P109 453 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 SERTAD1Q9UHV2 236 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 WNT6Q9Y6F9 365 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 CEP250Q9BV73 2442 aa14.57□□□□□ -0.08
COL6A3-211ENST00000491233 MED19A0JLT2 244 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 TRDMT1O14717 391 aaKnown RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 HRO43593 1189 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 EXOC3O60645 756 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 TACC1O75410 805 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 EGFP01133 1207 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 TGM1P22735 817 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 GJA4P35212 333 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 GNL1P36915 607 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 MYL6P60660 151 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 USP46P62068 366 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 AMPD2Q01433 879 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 DNM1Q05193 864 aaKnown RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 SPEM2Q0P670 501 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 GRSF1Q12849 480 aaKnown RBP eCLIP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 TRPC3Q13507 836 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 KNOP1Q1ED39 458 aaKnown RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 WDR72Q3MJ13 1102 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 NAIF1Q69YI7 327 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 ATL3Q6DD88 541 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 DENND5BQ6ZUT9 1274 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-211ENST00000491233 CEP57L1Q8IYX8 460 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 PLEKHO2Q8TD55 490 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 SH3RF2Q8TEC5 729 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 OSCP1Q8WVF1 389 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 ZNF516Q92618 1163 aa14.56□□□□□ -0.08
COL6A3-211ENST00000491233 SPATA17Q96L03 361 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms