RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SOBPA7XYQ1 873 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 SPECC1L-ADORA2AF8WAN1 911 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 NR3C1P04150 777 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 BDNFP23560 247 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 ATICP31939 592 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 TNK2Q07912 1038 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 MDH1BQ5I0G3 518 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 VSTM1Q6UX27 236 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 MON1AQ86VX9 555 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 MYCBPAPQ8TBZ2 947 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 TMEM174Q8WUU8 243 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 SYAP1Q96A49 352 aaPredicted RBP24.57■■□□□ 1.52
COL9A3-213ENST00000489045 GDPD2Q9HCC8 539 aa24.57■■□□□ 1.52
COL9A3-213ENST00000489045 PRMT8Q9NR22 394 aaPredicted RBP24.57■■□□□ 1.52
COL9A3-213ENST00000489045 THG1LQ9NWX6 298 aaKnown RBP24.57■■□□□ 1.52
COL9A3-213ENST00000489045 LMNAP02545 664 aaKnown RBP24.56■■□□□ 1.52
COL9A3-213ENST00000489045 FAM163BP0C2L3 166 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 CHRNB1P11230 501 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 CTHP32929 405 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 GRIK1P39086 918 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 AP3M2P53677 418 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 CLDN10P78369 228 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 DPYDQ12882 1025 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 C1orf228Q6PIY5 440 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 TXNDC11Q6PKC3 985 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 KRBA2Q6ZNG9 492 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 RALGPS2Q86X27 583 aaPredicted RBP24.56■■□□□ 1.52
COL9A3-213ENST00000489045 CCDC47Q96A33 483 aaKnown RBP24.56■■□□□ 1.52
COL9A3-213ENST00000489045 DPEP3Q9H4B8 488 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 KIF9Q9HAQ2 790 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 TRPC7Q9HCX4 862 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 TDP1Q9NUW8 608 aa24.56■■□□□ 1.52
COL9A3-213ENST00000489045 RHOBTB3O94955 611 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 CLSTN1O94985 981 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 DLG4P78352 724 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 ZNF699Q32M78 642 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 TSSK4Q6SA08 328 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 SPATA17Q96L03 361 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 IER2Q9BTL4 223 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 SMYD3Q9H7B4 428 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 GKN1Q9NS71 199 aa24.55■■□□□ 1.52
COL9A3-213ENST00000489045 SPTBN4Q9H254 2564 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 EP300Q09472 2414 aaPredicted RBP24.54■■□□□ 1.52
COL9A3-213ENST00000489045 CALUO43852 315 aaPredicted RBP24.54■■□□□ 1.52
COL9A3-213ENST00000489045 VNN1O95497 513 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 C4BPAP04003 597 aaKnown RBP24.54■■□□□ 1.52
COL9A3-213ENST00000489045 PTPN1P18031 435 aaKnown RBP24.54■■□□□ 1.52
COL9A3-213ENST00000489045 ANXA13P27216 316 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 NCOA4Q13772 614 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 ZNF268Q14587 947 aaPredicted RBP24.54■■□□□ 1.52
COL9A3-213ENST00000489045 RIN3Q8TB24 985 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 ELMO3Q96BJ8 720 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 VRTNQ9H8Y1 702 aa24.54■■□□□ 1.52
COL9A3-213ENST00000489045 RBM12Q9NTZ6 932 aaKnown RBP24.54■■□□□ 1.52
COL9A3-213ENST00000489045 A8MXQ7 604 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 TRIM66O15016 1216 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 KINO60870 393 aaKnown RBP24.53■■□□□ 1.52
COL9A3-213ENST00000489045 KIF20AO95235 890 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 RAP1GAPP47736 663 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 LRRC32Q14392 662 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 ITPRIPL2Q3MIP1 535 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 ZNF667Q5HYK9 610 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 WDR44Q5JSH3 913 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 CEP135Q66GS9 1140 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 TRIM68Q6AZZ1 485 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 SCARA5Q6ZMJ2 495 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 CEP295NLQ96MC4 621 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 SLC22A12Q96S37 553 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 FAM83CQ9BQN1 747 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 HPS4Q9NQG7 708 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 MAPK8IP1Q9UQF2 711 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 TRAF3IP3Q9Y228 551 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 FRMD4BQ9Y2L6 1034 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 PCDHGA2Q9Y5H1 932 aa24.53■■□□□ 1.52
COL9A3-213ENST00000489045 OTOGLQ3ZCN5 2332 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 TRAV19A0A0A6YYK7 116 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 F8VP50 259 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 ZNF202O95125 648 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 CKMP06732 381 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 USP17L7P0C7H9 530 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 CDH8P55286 799 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 USP46P62068 366 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 BECN1Q14457 450 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 PON2Q15165 354 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 DENND5BQ6ZUT9 1274 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 B3GALNT2Q8NCR0 500 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 TMC2Q8TDI7 906 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 CYP2S1Q96SQ9 504 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 EBF3Q9H4W6 596 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 ZSCAN32Q9NX65 697 aa24.52■■□□□ 1.52
COL9A3-213ENST00000489045 MYH10P35580 1976 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 C2orf78A6NCI8 922 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 CACNA2D1P54289 1103 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 FAM160A1Q05DH4 1040 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 RUNX3Q13761 415 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 GAS6Q14393 721 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 CC2D1AQ6P1N0 951 aaPredicted RBP24.51■■□□□ 1.51
COL9A3-213ENST00000489045 MAMSTRQ6ZN01 415 aa24.51■■□□□ 1.51
COL9A3-213ENST00000489045 ARL14EPQ8N8R7 260 aaPredicted RBP24.51■■□□□ 1.51
COL9A3-213ENST00000489045 ZBTB44Q8NCP5 570 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms