RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 TADA3O75528 432 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 HDCP19113 662 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 CYP2F1P24903 491 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 PCSK1P29120 753 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 LHX1P48742 406 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 ACAP1Q15027 740 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 CRY1Q16526 586 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 UAP1L1Q3KQV9 507 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 C2orf27AQ580R0 203 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 TRIM61Q5EBN2 209 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 SPDYCQ5MJ68 293 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 SDHAF4Q5VUM1 108 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 NAIF1Q69YI7 327 aaPredicted RBP13.52□□□□□ -0.25
SKA3-206ENST00000475251 C4orf50Q6ZRC1 276 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 EFCAB13Q8IY85 973 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 PDCL2Q8N4E4 241 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 LRRC52Q8N7C0 313 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 KRI1Q8N9T8 703 aaKnown RBP13.52□□□□□ -0.25
SKA3-206ENST00000475251 MDGA1Q8NFP4 955 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 SH3RF2Q8TEC5 729 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 WHAMMQ8TF30 809 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 ZCCHC14Q8WYQ9 949 aaKnown RBP13.52□□□□□ -0.25
SKA3-206ENST00000475251 PIGKQ92643 395 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 GATA6Q92908 595 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 TMEM121BQ9BXQ6 578 aaPredicted RBP13.52□□□□□ -0.25
SKA3-206ENST00000475251 POLMQ9NP87 494 aaPredicted RBP13.52□□□□□ -0.25
SKA3-206ENST00000475251 EXOC7Q9UPT5 735 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 INVSQ9Y283 1065 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 R3HCC1Q9Y3T6 440 aaKnown RBP13.52□□□□□ -0.25
SKA3-206ENST00000475251 MYO16Q9Y6X6 1858 aa13.52□□□□□ -0.25
SKA3-206ENST00000475251 MYMKA6NI61 221 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 ANKRD63C9JTQ0 380 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 TNFRSF10BO14763 440 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 MAP3K13O43283 966 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 LDHAP00338 332 aaKnown RBP13.51□□□□□ -0.25
SKA3-206ENST00000475251 SPINK2P20155 84 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 POLR2BP30876 1174 aaKnown RBP13.51□□□□□ -0.25
SKA3-206ENST00000475251 SEC13P55735 322 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 IRX4P78413 519 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 TFAMQ00059 246 aaKnown RBP13.51□□□□□ -0.25
SKA3-206ENST00000475251 TOP6BLQ8N6T0 577 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 ARL14EPQ8N8R7 260 aaPredicted RBP13.51□□□□□ -0.25
SKA3-206ENST00000475251 STKLD1Q8NE28 680 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 DEFB124Q8NES8 71 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 RAD54LQ92698 747 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 SLC22A12Q96S37 553 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 FIZ1Q96SL8 496 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 CYP2S1Q96SQ9 504 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 GCNT4Q9P109 453 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 GTF3C4Q9UKN8 822 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 L1RE1Q9UN81 338 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 AGAP1Q9UPQ3 857 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 LAMA1P25391 3075 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 FRYQ5TBA9 3013 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 THADAQ6YHU6 1953 aa13.51□□□□□ -0.25
SKA3-206ENST00000475251 CACNA1GO43497 2377 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 SRRM3A6NNA2 597 aaPredicted RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 PATE3B3GLJ2 98 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 H0Y626 953 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 H3BQV1 296 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 K7EQS6 105 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 SLC9A3R1O14745 358 aaPredicted RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 TRIM16O95361 564 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 BMP15O95972 392 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 ITGB3P05106 788 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 BCKDHBP21953 392 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 HOXD12P35452 270 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 OPRD1P41143 372 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 EIF2DP41214 584 aaKnown RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 MAGEA11P43364 429 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 PPP3CCP48454 512 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 ATXN3P54252 364 aaPredicted RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 MCM6Q14566 821 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 MAPRE1Q15691 268 aaKnown RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 ZC2HC1CQ53FD0 456 aaPredicted RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 EOGTQ5NDL2 527 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 TTC30AQ86WT1 665 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 SYT12Q8IV01 421 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 SCN4BQ8IWT1 228 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 ADGRF2Q8IZF7 708 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 OLIG1Q8TAK6 271 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 LARP4BQ92615 738 aaKnown RBP13.5□□□□□ -0.25
SKA3-206ENST00000475251 BLOC1S4Q9NUP1 217 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 GDAP2Q9NXN4 497 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 TRPM5Q9NZQ8 1165 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 ITGA11Q9UKX5 1188 aa13.5□□□□□ -0.25
SKA3-206ENST00000475251 C2orf78A6NCI8 922 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.49□□□□□ -0.25
SKA3-206ENST00000475251 TISP43B9A030 160 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 TULP1O00294 542 aaPredicted RBP13.49□□□□□ -0.25
SKA3-206ENST00000475251 PLCG1P19174 1290 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 ACAT1P24752 427 aaKnown RBP13.49□□□□□ -0.25
SKA3-206ENST00000475251 ANXA13P27216 316 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 LONP1P36776 959 aaKnown RBP13.49□□□□□ -0.25
SKA3-206ENST00000475251 P2RY2P41231 377 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 RBP5P82980 135 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 MYO1EQ12965 1108 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 SLC23A3Q6PIS1 610 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 VSTM1Q6UX27 236 aa13.49□□□□□ -0.25
SKA3-206ENST00000475251 CRELD2Q6UXH1 353 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms