RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SH3PXD2BA1X283 911 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 USP17L8P0C7I0 530 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 MLNP12872 115 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 UQCRBP14927 111 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 EPHB2P29323 1055 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 DHDDSQ86SQ9 333 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SCYL3Q8IZE3 742 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 GLIS1Q8NBF1 620 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CPT1BQ92523 772 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CCDC77Q9BR77 488 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PRDM5Q9NQX1 630 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 ARL8BQ9NVJ2 186 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 POTEB3A0JP26 581 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ADRB2P07550 413 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 VAV1P15498 845 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CYP11B1P15538 503 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 MYL6P60660 151 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ANKRD20A4Q4UJ75 823 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 FKBP1CQ5VVH2 108 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 POTEBQ6S5H4 581 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 LRRC74BQ6ZQY2 392 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 DAAM2Q86T65 1068 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 C4orf19Q8IY42 314 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 APOPT1Q96IL0 206 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CFAP57Q96MR6 1250 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 NLRP3Q96P20 1036 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 FERMT1Q9BQL6 677 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 PSMC3IPQ9P2W1 217 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 FRMD4BQ9Y2L6 1034 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TEX264Q9Y6I9 313 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 WTIPA6NIX2 430 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 RGS13O14921 159 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ABCD1P33897 745 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 MAGEA4P43358 317 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 HK2P52789 917 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ITGA8P53708 1063 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GRAPQ13588 217 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SNX1Q13596 522 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 PTPROQ16827 1216 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 QRICH1Q2TAL8 776 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CNPY1Q3B7I2 92 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ANGEL2Q5VTE6 544 aaKnown RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ACAD10Q6JQN1 1059 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 KSR1Q8IVT5 923 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GRAPLQ8TC17 118 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 BTN2A3PQ96KV6 586 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 RUSC1Q9BVN2 902 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 RANBP17Q9H2T7 1088 aaKnown RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM9Q9P0T7 183 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 STK39Q9UEW8 545 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 hCG_1818297A0A087WSY0 165 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 LDHBP07195 334 aaKnown RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ADRA1DP25100 572 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 PCK1P35558 622 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 KCNA1Q09470 495 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SEL1L2Q5TEA6 688 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 HACD2Q6Y1H2 254 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 PSMB7Q99436 277 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ECSITQ9BQ95 431 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 OSBPL8Q9BZF1 889 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 OCEL1Q9H607 264 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM206Q9H813 350 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GCNT4Q9P109 453 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 IPO11Q9UI26 975 aaKnown RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SOX13Q9UN79 622 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 FAM50BQ9Y247 325 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 DLGAP1O14490 977 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM63AO94886 807 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CLTAP09496 248 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 MYCLP12524 364 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TCP10Q12799 353 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 LAMB3Q13751 1172 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GRIK5Q16478 980 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 NEPROQ6NW34 567 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 C1orf228Q6PIY5 440 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ATG14Q6ZNE5 492 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CDHR3Q6ZTQ4 885 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ZFP28Q8NHY6 868 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 MGARPQ8TDB4 240 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 NSL1Q96IY1 281 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SIGLEC10Q96LC7 697 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TUBGCP5Q96RT8 1024 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 RBM15Q96T37 977 aaKnown RBP eCLIP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 WDR11Q9BZH6 1224 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 NRDE2Q9H7Z3 1164 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 VPS45Q9NRW7 570 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CRCPO75575 148 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SERPINA6P08185 405 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 JUNBP17275 347 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 DSG3P32926 999 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TPD52P55327 224 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 KCNJ11Q14654 390 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 RNF220Q5VTB9 566 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SLC4A11Q8NBS3 891 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CYTH2Q99418 400 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ANKEF1Q9NU02 776 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 UTP6Q9NYH9 597 aaKnown RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 PSMD13Q9UNM6 376 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 USTQ9Y2C2 406 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms