RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PLEKHA4Q9H4M7 779 aa15.69■□□□□ 0.1
COL9A3-209ENST00000469852 GRPEL1Q9HAV7 217 aa15.69■□□□□ 0.1
COL9A3-209ENST00000469852 ABCB6Q9NP58 842 aa15.69■□□□□ 0.1
COL9A3-209ENST00000469852 KRT82Q9NSB4 513 aa15.69■□□□□ 0.1
COL9A3-209ENST00000469852 TSPAN16Q9UKR8 245 aa15.69■□□□□ 0.1
COL9A3-209ENST00000469852 GREB1Q4ZG55 1949 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 A0A1W2PQJ5 194 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 CCL16O15467 120 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 THAP12O43422 761 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 AP1G2O75843 785 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 ELF1P32519 619 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 STAT1P42224 750 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 ARID5AQ03989 594 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 TWF1Q12792 350 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 TBX2Q13207 712 aaPredicted RBP15.68■□□□□ 0.1
COL9A3-209ENST00000469852 LIN9Q5TKA1 542 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 ANKRD54Q6NXT1 300 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 CLEC20AQ6ZU45 233 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 NOP9Q86U38 636 aaKnown RBP15.68■□□□□ 0.1
COL9A3-209ENST00000469852 SCN4BQ8IWT1 228 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 SLC20A1Q8WUM9 679 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 ZNF606Q8WXB4 792 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 ZNF707Q96C28 371 aaPredicted RBP15.68■□□□□ 0.1
COL9A3-209ENST00000469852 KCNK16Q96T55 309 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 NUP58Q9BVL2 599 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 NOCTQ9UK39 431 aaKnown RBP15.68■□□□□ 0.1
COL9A3-209ENST00000469852 CAPN11Q9UMQ6 739 aa15.68■□□□□ 0.1
COL9A3-209ENST00000469852 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.68■□□□□ 0.1
COL9A3-209ENST00000469852 F8VP50 259 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 TULP2O00295 520 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 MICAL2O94851 1124 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 CYP11B1P15538 503 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 MAGEA11P43364 429 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 MAP3K7CLP57077 242 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 CLUL1Q15846 466 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 PKDCCQ504Y2 493 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 PPM1LQ5SGD2 360 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 RARS2Q5T160 578 aaKnown RBP15.67■□□□□ 0.1
COL9A3-209ENST00000469852 DENND1BQ6P3S1 775 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 LCLAT1Q6UWP7 414 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 TMC5Q6UXY8 1006 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 CCDC149Q6ZUS6 474 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 IRF2BP2Q7Z5L9 587 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 OLIG1Q8TAK6 271 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 UBA3Q8TBC4 463 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 EPS8L1Q8TE68 723 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 GIPC2Q8TF65 315 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 HDAC7Q8WUI4 952 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 DDX1Q92499 740 aaKnown RBP15.67■□□□□ 0.1
COL9A3-209ENST00000469852 SMARCD1Q96GM5 515 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 MSLNLQ96KJ4 702 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 EDEM3Q9BZQ6 932 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 HSFX1Q9UBD0 423 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 KIAA1257Q9ULG3 409 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 MAFFQ9ULX9 164 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.67■□□□□ 0.1
COL9A3-209ENST00000469852 NOTCH4Q99466 2003 aa15.67■□□□□ 0.1
COL9A3-209ENST00000469852 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-209ENST00000469852 CCDC195A0A1B0GUA6 201 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 FAM170AA1A519 330 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 HHLA1C9JL84 531 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 H3BQ06 376 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-209ENST00000469852 TNFRSF10AO00220 468 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 NRG2O14511 850 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-209ENST00000469852 FAM200BP0CF97 657 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 CHRNB2P17787 502 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 GRIK1P39086 918 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 ZBED6P86452 979 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 PTK2Q05397 1052 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 PDE4CQ08493 712 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 MTMR3Q13615 1198 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 SKIV2LQ15477 1246 aaKnown RBP15.66■□□□□ 0.1
COL9A3-209ENST00000469852 CNGA2Q16280 664 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 TAF3Q5VWG9 929 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 VSTM1Q6UX27 236 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 GPRIN1Q7Z2K8 1008 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 ATXN2LQ8WWM7 1075 aaKnown RBP15.66■□□□□ 0.1
COL9A3-209ENST00000469852 DUSP16Q9BY84 665 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 S1PR5Q9H228 398 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 UBE2ZQ9H832 354 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-209ENST00000469852 SFXN1Q9H9B4 322 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 CSNK1G1Q9HCP0 422 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 DZANK1Q9NVP4 752 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 HCFC1R1Q9NWW0 138 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 MYO6Q9UM54 1294 aa15.66■□□□□ 0.1
COL9A3-209ENST00000469852 SPDYE4A6NLX3 237 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 M0QYV0 167 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 PAPLNO95428 1278 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 LRG1P02750 347 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 MMEP08473 750 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 NPR3P17342 541 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 KRT9P35527 623 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 TUFMP49411 452 aaKnown RBP15.65■□□□□ 0.1
COL9A3-209ENST00000469852 ADKP55263 362 aaKnown RBP15.65■□□□□ 0.1
COL9A3-209ENST00000469852 USP46P62068 366 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 SFMBT2Q5VUG0 894 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 SMYD5Q6GMV2 418 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 PASD1Q8IV76 773 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 ANKRD52Q8NB46 1076 aa15.65■□□□□ 0.1
COL9A3-209ENST00000469852 SECISBP2LQ93073 1101 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms