RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ATG13O75143 517 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 TRIM21P19474 475 aaKnown RBP18.71■□□□□ 0.59
COL7A1-206ENST00000466591 LMO2P25791 158 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 HOXD13P35453 343 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 MAGEA11P43364 429 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 FAM160A1Q05DH4 1040 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 IFRD2Q12894 506 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-206ENST00000466591 NR1H3Q13133 447 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 CCDC142Q17RM4 750 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 Q6ZS52 159 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 DENND5BQ6ZUT9 1274 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 DGLUCYQ7Z3D6 616 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 SPATA32Q96LK8 384 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 SERTAD1Q9UHV2 236 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 SLC8A2Q9UPR5 921 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 COL4A2P08572 1712 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 ATP8B3O60423 1300 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 CHURC1-FNTBB4DL54 471 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 LILRB5O75023 590 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 HDCP19113 662 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 SDHBP21912 280 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 FNTBP49356 437 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 KRT85P78386 507 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 PSMD2Q13200 908 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 ZNF268Q14587 947 aaPredicted RBP18.7■□□□□ 0.58
COL7A1-206ENST00000466591 RIF1Q5UIP0 2472 aaKnown RBP18.7■□□□□ 0.58
COL7A1-206ENST00000466591 SCARA3Q6AZY7 606 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 FAM171BQ6P995 826 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 MAMSTRQ6ZN01 415 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 TMEM150AQ86TG1 271 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 GRAMD1CQ8IYS0 662 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 ZNF687Q8N1G0 1237 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 CXorf38Q8TB03 319 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 MYCBPAPQ8TBZ2 947 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 KBTBD7Q8WVZ9 684 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 ATP2A3Q93084 1043 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 PCED1BQ96HM7 432 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 MYRFLQ96LU7 910 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 MRPL45Q9BRJ2 306 aaKnown RBP18.7■□□□□ 0.58
COL7A1-206ENST00000466591 MED10Q9BTT4 135 aa18.7■□□□□ 0.58
COL7A1-206ENST00000466591 KIF20AO95235 890 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 SLFN14P0C7P3 912 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 P4HA1P13674 534 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 ARSAP15289 507 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 ATICP31939 592 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 AP3M2P53677 418 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 LMNB2Q03252 620 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 PUM1Q14671 1186 aaKnown RBP eCLIP18.69■□□□□ 0.58
COL7A1-206ENST00000466591 ZNF699Q32M78 642 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 TDRD10Q5VZ19 366 aaKnown RBP18.69■□□□□ 0.58
COL7A1-206ENST00000466591 LONP2Q86WA8 852 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 ARL14EPQ8N8R7 260 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-206ENST00000466591 RMDN1Q96DB5 314 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 CYP2S1Q96SQ9 504 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 PKMYT1Q99640 499 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 ELOVL4Q9GZR5 314 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 CRTAC1Q9NQ79 661 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 USP25Q9UHP3 1055 aa18.69■□□□□ 0.58
COL7A1-206ENST00000466591 CDV3Q9UKY7 258 aaKnown RBP18.69■□□□□ 0.58
COL7A1-206ENST00000466591 ZNF638Q14966 1978 aaKnown RBP18.68■□□□□ 0.58
COL7A1-206ENST00000466591 TACC1O75410 805 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 CST3P01034 146 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-206ENST00000466591 CNR2P34972 360 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 MYL6P60660 151 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 PKP1Q13835 747 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 BMT2Q1RMZ1 405 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 ZNF667Q5HYK9 610 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 LAIR1Q6GTX8 287 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 SH3RF2Q8TEC5 729 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 NELL1Q92832 810 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 PAGE5Q96GU1 130 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 CCDC34Q96HJ3 373 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 SPATA17Q96L03 361 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 CEP295NLQ96MC4 621 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 SLITRK1Q96PX8 696 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 P2RY13Q9BPV8 354 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 FAM83CQ9BQN1 747 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 FRMD4BQ9Y2L6 1034 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 ATP6V1DQ9Y5K8 247 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 WNT6Q9Y6F9 365 aa18.68■□□□□ 0.58
COL7A1-206ENST00000466591 FANCMQ8IYD8 2048 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 A0A1B0GVL5 298 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 F8VP50 259 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 PFKFB1P16118 471 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 PTPN1P18031 435 aaKnown RBP18.67■□□□□ 0.58
COL7A1-206ENST00000466591 DRD1P21728 446 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 PPP3CCP48454 512 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 CCINQ13939 588 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 GAS6Q14393 721 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 RSPO4Q2I0M5 234 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-206ENST00000466591 CEP135Q66GS9 1140 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 SCARA5Q6ZMJ2 495 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 B3GALNT2Q8NCR0 500 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 OSCP1Q8WVF1 389 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 TNIP3Q96KP6 325 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 ECT2Q9H8V3 914 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 HPS4Q9NQG7 708 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 RCOR1Q9UKL0 485 aa18.67■□□□□ 0.58
COL7A1-206ENST00000466591 DMDP11532 3685 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 C2orf78A6NCI8 922 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms