RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TMEM132DQ14C87 1099 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 SNRNP35Q16560 246 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 EDRF1Q3B7T1 1238 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 PLK5Q496M5 336 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 TPGS2Q68CL5 300 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 JADE1Q6IE81 842 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 CENPPQ6IPU0 288 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 PDZD4Q76G19 769 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 RALGPS2Q86X27 583 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 E2F7Q96AV8 911 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 DHTKD1Q96HY7 919 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 TUBGCP4Q9UGJ1 667 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 GPSM3Q9Y4H4 160 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 FREM2Q5SZK8 3169 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 ABCA7Q8IZY2 2146 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 TSC2P49815 1807 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 SLC38A8A6NNN8 435 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 PPP1R3GB7ZBB8 358 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 SPECC1L-ADORA2AF8WAN1 911 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 CHADO15335 359 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 HYAL3O43820 417 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 CAPNS1P04632 268 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 ATF2P15336 505 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 PTMSP20962 102 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 NR2F2P24468 414 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 RPL13P26373 211 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 ELF1P32519 619 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 SOX9P48436 509 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 ROR1Q01973 937 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 SURF1Q15526 300 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 CYP4A22Q5TCH4 519 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 SPATA1Q5VX52 437 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 TXNDC11Q6PKC3 985 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 C19orf48Q6RUI8 117 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 RBM43Q6ZSC3 357 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 PROSER1Q86XN7 944 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 NT5DC4Q86YG4 428 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 YAF2Q8IY57 180 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 EFCAB13Q8IY85 973 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 RDH13Q8NBN7 331 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 TSG101Q99816 390 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 OXCT2Q9BYC2 517 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 DUSP15Q9H1R2 295 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 FBXL5Q9UKA1 691 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 MAFFQ9ULX9 164 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 PCDHB8Q9UN66 801 aa12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 HELZ2Q9BYK8 2649 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-206ENST00000466342 SHROOM3Q8TF72 1996 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 LNP1A1A4G5 178 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 BCLAF3A2AJT9 711 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 HEPACAM2A8MVW5 462 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 M0QZQ0 153 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 PRRG1O14668 218 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 RHOBTB1O94844 696 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 CTHP32929 405 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 AARSP49588 968 aaKnown RBP eCLIP12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 PMS1P54277 932 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 CREB5Q02930 508 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 LRRC63Q05C16 580 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 CYP24A1Q07973 514 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 PSMD6Q15008 389 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 PON2Q15165 354 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 CTXN3Q4LDR2 81 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 CCDC183Q5T5S1 534 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 ANKRD40Q6AI12 368 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 ZNF280DQ6N043 979 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 KIAA1211LQ6NV74 962 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 TCEAL8Q8IYN2 117 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 BEST2Q8NFU1 509 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 ZSCAN18Q8TBC5 510 aaPredicted RBP12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 FAM200AQ8TCP9 573 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 GPR88Q9GZN0 384 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 PDE11AQ9HCR9 933 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 TMEM9BQ9NQ34 198 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 KLK13Q9UKR3 277 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 FRMD4BQ9Y2L6 1034 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 BPTFQ12830 3046 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 NCANO14594 1321 aa12.78□□□□□ -0.36
SQSTM1-206ENST00000466342 NUP210Q8TEM1 1887 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 FAM221BA6H8Z2 402 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 TRIM49BA6NDI0 452 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 CDX4O14627 284 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 MAPK13O15264 365 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 MOSPD3O75425 235 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 OAZ2O95190 189 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 CASP4P49662 377 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 ARPP19P56211 112 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 FCHO2Q0JRZ9 810 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 PAK1Q13153 545 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 ADAM9Q13443 819 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 ELF2Q15723 593 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 CEP135Q66GS9 1140 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 KLHL10Q6JEL2 608 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 FOXR2Q6PJQ5 311 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 WDR49Q8IV35 697 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 ZC3H3Q8IXZ2 948 aaKnown RBP12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 CAMKK1Q8N5S9 505 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 MLKLQ8NB16 471 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 NELFBQ8WX92 580 aa12.77□□□□□ -0.37
SQSTM1-206ENST00000466342 MKNK1Q9BUB5 465 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms