RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 RMDN1Q96DB5 314 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 GCNAQ96QF7 691 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 NELL2Q99435 816 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 ZNF518BQ9C0D4 1074 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 PARD6AQ9NPB6 346 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 ZSCAN32Q9NX65 697 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 GCNT4Q9P109 453 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 HMGXB4Q9UGU5 601 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 MRPS17Q9Y2R5 130 aaKnown RBP12.61□□□□□ -0.39
HDAC4-202ENST00000430200 PCDHGA2Q9Y5H1 932 aa12.61□□□□□ -0.39
HDAC4-202ENST00000430200 SDK1Q7Z5N4 2213 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 CLDN5O00501 218 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 SCAMP3O14828 347 aaKnown RBP12.6□□□□□ -0.39
HDAC4-202ENST00000430200 SLFN14P0C7P3 912 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 CSH1P0DML2 217 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 CSH2P0DML3 217 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 TGM1P22735 817 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 PCSK1P29120 753 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 MAGEA11P43364 429 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 LHX1P48742 406 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 MLLT6P55198 1093 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-202ENST00000430200 LPAL2Q16609 132 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 KNOP1Q1ED39 458 aaKnown RBP12.6□□□□□ -0.39
HDAC4-202ENST00000430200 SCARA5Q6ZMJ2 495 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 MON1AQ86VX9 555 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 SPATA2LQ8IUW3 424 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-202ENST00000430200 CELF5Q8N6W0 485 aaKnown RBP12.6□□□□□ -0.39
HDAC4-202ENST00000430200 SPATA18Q8TC71 538 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 FUBP3Q96I24 572 aaKnown RBP eCLIP12.6□□□□□ -0.39
HDAC4-202ENST00000430200 LRRC27Q9C0I9 530 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 TRPC7Q9HCX4 862 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 GKN1Q9NS71 199 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 TDP1Q9NUW8 608 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 DMAC2Q9NW81 257 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 CDH9Q9ULB4 789 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 WNT6Q9Y6F9 365 aa12.6□□□□□ -0.39
HDAC4-202ENST00000430200 CEP192Q8TEP8 1941 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 FAM237AA0A1B0GTK4 181 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 PVALEFA0A1B0GWK0 134 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 CHURC1-FNTBB4DL54 471 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 F8VP50 259 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 DPYSL4O14531 572 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 HSP90AA1P07900 732 aaKnown RBP12.59□□□□□ -0.39
HDAC4-202ENST00000430200 TNNI1P19237 187 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 AVPR1AP37288 418 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 FNTBP49356 437 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 NDUFA8P51970 172 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 CDH8P55286 799 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 AMPD3Q01432 767 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 CYP27A1Q02318 531 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 MYO1EQ12965 1108 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 ORC1Q13415 861 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 MTF1Q14872 753 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 TAF12Q16514 161 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 GAB4Q2WGN9 574 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 ITPRIPL2Q3MIP1 535 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 DPH6Q7L8W6 267 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 RALGPS2Q86X27 583 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-202ENST00000430200 ARL14EPQ8N8R7 260 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-202ENST00000430200 MYCBPAPQ8TBZ2 947 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 PARD3BQ8TEW8 1205 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 RUBCNQ92622 972 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 MMS19Q96T76 1030 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 B3GNT5Q9BYG0 378 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 SEMA4AQ9H3S1 761 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 C8orf33Q9H7E9 229 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-202ENST00000430200 GDPD2Q9HCC8 539 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 KIAA1586Q9HCI6 787 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 FAM13BQ9NYF5 915 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
HDAC4-202ENST00000430200 MYO18AQ92614 2054 aaKnown RBP12.58□□□□□ -0.39
HDAC4-202ENST00000430200 NCAM2O15394 837 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 TACC1O75410 805 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 STAU1O95793 577 aaKnown RBP12.58□□□□□ -0.4
HDAC4-202ENST00000430200 EGFP01133 1207 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 CKMP06732 381 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 PGFP49763 221 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 RPL10AP62906 217 aaKnown RBP12.58□□□□□ -0.4
HDAC4-202ENST00000430200 CLDN10P78369 228 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 MESP2Q0VG99 397 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 RUNX3Q13761 415 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 ZNF268Q14587 947 aaPredicted RBP12.58□□□□□ -0.4
HDAC4-202ENST00000430200 SURF1Q15526 300 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 WDR72Q3MJ13 1102 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 TMEM196Q5HYL7 178 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 SPOPLQ6IQ16 392 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 MAMSTRQ6ZN01 415 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 PAQR9Q6ZVX9 377 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 HS2ST1Q7LGA3 356 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 SFTPA1Q8IWL2 248 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 SPEM1Q8N4L4 309 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 TTC16Q8NEE8 873 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 MRPS31Q92665 395 aaKnown RBP12.58□□□□□ -0.4
HDAC4-202ENST00000430200 MSANTD3Q96H12 275 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 TTLL2Q9BWV7 592 aa12.58□□□□□ -0.4
HDAC4-202ENST00000430200 NXF1Q9UBU9 619 aaKnown RBP12.58□□□□□ -0.4
HDAC4-202ENST00000430200 HRO43593 1189 aa12.57□□□□□ -0.4
HDAC4-202ENST00000430200 EXOC3O60645 756 aa12.57□□□□□ -0.4
HDAC4-202ENST00000430200 PAPSS2O95340 614 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-202ENST00000430200 OLFM2O95897 454 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms