RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 SMYD3Q9H7B4 428 aa16.59■□□□□ 0.25
SHOX2-202ENST00000425436 VRTNQ9H8Y1 702 aa16.59■□□□□ 0.25
SHOX2-202ENST00000425436 MTRRQ9UBK8 725 aa16.59■□□□□ 0.25
SHOX2-202ENST00000425436 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.59■□□□□ 0.25
SHOX2-202ENST00000425436 DSEQ9UL01 958 aa16.59■□□□□ 0.25
SHOX2-202ENST00000425436 CDY1Q9Y6F8 540 aa16.59■□□□□ 0.25
SHOX2-202ENST00000425436 V9GYY5 206 aaPredicted RBP16.59■□□□□ 0.25
SHOX2-202ENST00000425436 H7C4K7 107 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 ENC1O14682 589 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 WEE2P0C1S8 567 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 OR4Q2P0C623 313 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 TMEM253P0C7T8 217 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 SPATA31D3P0C874 917 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 ITIH3Q06033 890 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 LLGL2Q6P1M3 1020 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 SPATA31D4Q6ZUB0 917 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 LIMS2Q7Z4I7 341 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 ADGRF2Q8IZF7 708 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 PPM1KQ8N3J5 372 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 KBTBD7Q8WVZ9 684 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 SHC3Q92529 594 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 TMEM209Q96SK2 561 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 SDCBP2Q9H190 292 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 CAPN6Q9Y6Q1 641 aa16.58■□□□□ 0.24
SHOX2-202ENST00000425436 XIRP2A4UGR9 3374 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 ARHGEF37A1IGU5 675 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 LINC01565O15544 149 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 TBC1D4O60343 1298 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 PDGFRBP09619 1106 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 H2AFXP16104 143 aaPredicted RBP16.57■□□□□ 0.24
SHOX2-202ENST00000425436 ACAT1P24752 427 aaKnown RBP16.57■□□□□ 0.24
SHOX2-202ENST00000425436 MCM3P25205 808 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 LMO2P25791 158 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 PAFAH1B1P43034 410 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 BPIFB4P59827 614 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 DUSP6Q16828 381 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 TEX35Q5T0J7 233 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 ZNF280DQ6N043 979 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 DPH6Q7L8W6 267 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 ARHGEF19Q8IW93 802 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 THEM5Q8N1Q8 247 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 LRRN4CLQ8ND94 238 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 OR10T2Q8NGX3 314 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHOX2-202ENST00000425436 DDX43Q9NXZ2 648 aaKnown RBP16.57■□□□□ 0.24
SHOX2-202ENST00000425436 FNIP2Q9P278 1114 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 BACE2Q9Y5Z0 518 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 PLXNA3P51805 1871 aa16.57■□□□□ 0.24
SHOX2-202ENST00000425436 ANKRD62A6NC57 917 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 CES2O00748 559 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 ADH1AP07327 375 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 GZMAP12544 262 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 P4HA1P13674 534 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 GNL1P36915 607 aaPredicted RBP16.56■□□□□ 0.24
SHOX2-202ENST00000425436 ASPAP45381 313 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 NOP2P46087 812 aaKnown RBP16.56■□□□□ 0.24
SHOX2-202ENST00000425436 NDUFV1P49821 464 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 CCDC70Q6NSX1 233 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 EP400NLQ6ZTU2 488 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 ZNF572Q7Z3I7 529 aaPredicted RBP16.56■□□□□ 0.24
SHOX2-202ENST00000425436 GPIHBP1Q8IV16 184 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 GPR65Q8IYL9 337 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 TMEM86AQ8N2M4 240 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 OR6B3Q8NGW1 331 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 CTNNBL1Q8WYA6 563 aaPredicted RBP16.56■□□□□ 0.24
SHOX2-202ENST00000425436 PPP2R3CQ969Q6 453 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 ARID3AQ99856 593 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 SNX25Q9H3E2 840 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 SALL4Q9UJQ4 1053 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 NME7Q9Y5B8 376 aa16.56■□□□□ 0.24
SHOX2-202ENST00000425436 GABRDO14764 452 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 BUB1O43683 1085 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 PALMO75781 387 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 EPCAMP16422 314 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 CD58P19256 250 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 CLCN4P51793 760 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 CREMQ03060 361 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 TCEAL1Q15170 157 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 VN1R2Q8NFZ6 395 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 OSBPL9Q96SU4 736 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 LPIN3Q9BQK8 851 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 NIF3L1Q9GZT8 377 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 ATP8B1O43520 1251 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 TGM5O43548 720 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 ATP2C2O75185 946 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 WARSP23381 471 aaKnown RBP16.55■□□□□ 0.24
SHOX2-202ENST00000425436 TBXAS1P24557 533 aaPredicted RBP16.55■□□□□ 0.24
SHOX2-202ENST00000425436 LHX1P48742 406 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 GALCP54803 685 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 ROR1Q01973 937 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 ORC1Q13415 861 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 RAB33AQ14088 237 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 BRD3Q15059 726 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 SKIV2LQ15477 1246 aaKnown RBP16.55■□□□□ 0.24
SHOX2-202ENST00000425436 MEI1Q5TIA1 1274 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 SLC8B1Q6J4K2 584 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 LRRTM3Q86VH5 581 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 ZNF677Q86XU0 584 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 RHOT2Q8IXI1 618 aa16.55■□□□□ 0.24
SHOX2-202ENST00000425436 SLC22A17Q8WUG5 538 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms