RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 PARP1P09874 1014 aaKnown RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 IFIT2P09913 472 aaKnown RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 PPIFP30405 207 aaKnown RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 PRIM2P49643 509 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 AK2P54819 239 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 TAP1Q03518 808 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 ITIH3Q06033 890 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 ZNF543Q08ER8 600 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 HDAC1Q13547 482 aaPredicted RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 E2F2Q14209 437 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 LONRF1Q17RB8 773 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 PLA1AQ53H76 456 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 ARHGAP40Q5TG30 622 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 VPS53Q5VIR6 699 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 VWA1Q6PCB0 445 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 Q6YL49 198 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 GAS2L3Q86XJ1 694 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 VRK3Q8IV63 474 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 LNX2Q8N448 690 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 FAM109AQ8N4B1 249 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 SUPT20HQ8NEM7 779 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 TOR1AIP2Q8NFQ8 470 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 PARD3BQ8TEW8 1205 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 LPIN2Q92539 896 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 CAVIN3Q969G5 261 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 FAM136AQ96C01 138 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 TNIP3Q96KP6 325 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 COQ10AQ96MF6 247 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 PPP1R9BQ96SB3 815 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 AIFM2Q9BRQ8 373 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 PTDSS2Q9BVG9 487 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 BRIP1Q9BX63 1249 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 TPSD1Q9BZJ3 242 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 AMBRA1Q9C0C7 1298 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 PRKRIP1Q9H875 184 aaPredicted RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 KCTD5Q9NXV2 234 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 ITGB1BP2Q9UKP3 347 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 HDAC9Q9UKV0 1011 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 PHTF1Q9UMS5 762 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 ROCK2O75116 1388 aaKnown RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 ROCK1Q13464 1354 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 CCDC7Q96M83 1385 aa3.2□□□□□ -1.9
VPS41-206ENST00000418457 RPRD2Q5VT52 1461 aaKnown RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 EIF4G3O43432 1585 aaKnown RBP3.2□□□□□ -1.9
VPS41-206ENST00000418457 ZMYM4Q5VZL5 1548 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 KIF14Q15058 1648 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 POM121BA6NF01 834 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 TMEM191CA6NGB0 347 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 hCG_1984214I3L0E3 225 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 YY2O15391 372 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 PROM1O43490 865 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 PEX1O43933 1283 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 EIF5BO60841 1220 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 MT-ND5P03915 603 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ANXA2P07355 339 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 TXNP10599 105 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 HSPA5P11021 654 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 TGM1P22735 817 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 GDF5P43026 501 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 STT3AP46977 705 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 CARSP49589 748 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 CASP5P51878 434 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 NXPH1P58417 271 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 MYO1EQ12965 1108 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 INSCQ1MX18 579 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SYCP2LQ5T4T6 812 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ICE2Q659A1 982 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ZDHHC24Q6UX98 284 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 Q6ZNX1 250 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 TSHZ1Q6ZSZ6 1077 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 UNC13DQ70J99 1090 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ZNF627Q7L945 461 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 DPP9Q86TI2 863 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ZNF280BQ86YH2 543 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 LIX1LQ8IVB5 337 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 YAF2Q8IY57 180 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ULK2Q8IYT8 1036 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SDR16C5Q8N3Y7 309 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SLC44A3Q8N4M1 653 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.19□□□□□ -1.9
VPS41-206ENST00000418457 CCDC33Q8N5R6 958 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SVIPQ8NHG7 77 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 MYCBPAPQ8TBZ2 947 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 IPCEF1Q8WWN9 437 aaPredicted RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 IQCDQ96DY2 449 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 FBXL20Q96IG2 436 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 PGBD1Q96JS3 809 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SNX22Q96L94 193 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 PRRX2Q99811 253 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 MYD88Q99836 296 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ACTRT3Q9BYD9 372 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 ZNF700Q9H0M5 742 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 CHST8Q9H2A9 424 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SERHLQ9NQF3 203 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SYBUQ9NX95 663 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 SERTAD3Q9UJW9 196 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 NDRG4Q9ULP0 352 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 NUDCQ9Y266 331 aa3.19□□□□□ -1.9
VPS41-206ENST00000418457 MRPS17Q9Y2R5 130 aaKnown RBP3.19□□□□□ -1.9
VPS41-206ENST00000418457 COL4A3Q01955 1670 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms