RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ATG16L2Q8NAA4 619 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 CPEB3Q8NE35 698 aaKnown RBP5.49□□□□□ -1.53
VPS54-204ENST00000416400 PROKR1Q8TCW9 393 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 SMCR8Q8TEV9 937 aaPredicted RBP5.49□□□□□ -1.53
VPS54-204ENST00000416400 MYEOVQ96EZ4 313 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 SLC46A1Q96NT5 459 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 TRIB1Q96RU8 372 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 NEU1Q99519 415 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 TEX101Q9BY14 249 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 ALOXE3Q9BYJ1 711 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 ETAA1Q9NY74 926 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 DACT1Q9NYF0 836 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 LRFN1Q9P244 771 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 KCNE5Q9UJ90 142 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 LGALS16A8MUM7 142 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 SYT5O00445 386 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 FZD7O75084 574 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 CDKL5O76039 1030 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 ATXN1LP0C7T5 689 aaKnown RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 BTF3P20290 206 aaKnown RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 TACR2P21452 398 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 CPT1AP50416 773 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 COPAP53621 1224 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 FAM189BP81408 668 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 OCA2Q04671 838 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 ABHD18Q0P651 414 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 GALNT1Q10472 559 aaPredicted RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 ARHGEF7Q14155 803 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 RAB30Q15771 203 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 INSCQ1MX18 579 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 BEAN1Q3B7T3 259 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 LAYNQ6UX15 382 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 LRRC55Q6ZSA7 311 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 KRT28Q7Z3Y7 464 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 CLNKQ7Z7G1 428 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 GAS2L3Q86XJ1 694 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 PSD4Q8NDX1 1056 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 IPO4Q8TEX9 1081 aaKnown RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 TRAPPC12Q8WVT3 735 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 LENG9Q96B70 501 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 SNX27Q96L92 541 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 NAP1L4Q99733 375 aaKnown RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 GDF15Q99988 308 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 MESP1Q9BRJ9 268 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS54-204ENST00000416400 UBA5Q9GZZ9 404 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 DHX36Q9H2U1 1008 aaKnown RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 MMRN2Q9H8L6 949 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 GALNT9Q9HCQ5 603 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 OBP2BQ9NPH6 170 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 NECTIN3Q9NQS3 549 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 RGL1Q9NZL6 768 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 TESQ9UGI8 421 aaKnown RBP5.48□□□□□ -1.53
VPS54-204ENST00000416400 GTF2A1LQ9UNN4 478 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 SHOC2Q9UQ13 582 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 TBC1D30Q9Y2I9 924 aa5.48□□□□□ -1.53
VPS54-204ENST00000416400 A0A087WZ62 844 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 CCDC195A0A1B0GUA6 201 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 H7C4K7 107 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 TOR1BO14657 336 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 DCLK1O15075 740 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 NPC1O15118 1278 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 C6P13671 934 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 TPH1P17752 444 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 TNFRSF1AP19438 455 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 CHRM3P20309 590 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 GABRB3P28472 473 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 LOXL3P58215 753 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 CXADRP78310 365 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 KRT17Q04695 432 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 FPGSQ05932 587 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 PRKG1Q13976 671 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 SPARCL1Q14515 664 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 MGAT5BQ3V5L5 792 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 PLA1AQ53H76 456 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 USP17L6PQ6QN14 398 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 SLC30A10Q6XR72 485 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 PAF1Q8N7H5 531 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 GLIS1Q8NBF1 620 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 FAM71BQ8TC56 605 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 PNISRQ8TF01 805 aaKnown RBP5.47□□□□□ -1.53
VPS54-204ENST00000416400 BOD1Q96IK1 185 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 PAGR1Q9BTK6 254 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 XPNPEP3Q9NQH7 507 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 GRHPRQ9UBQ7 328 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 RAD54BQ9Y620 910 aa5.47□□□□□ -1.53
VPS54-204ENST00000416400 UNC119BA6NIH7 251 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 AQP7P3A6NL99 342 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 AQP12BA6NM10 295 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 ACKR2O00590 384 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 TRIM38O00635 465 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 KCNA2P16389 499 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 GDF5P43026 501 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 TOB1P50616 345 aaPredicted RBP5.46□□□□□ -1.54
VPS54-204ENST00000416400 LILRA4P59901 499 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 BOP1Q14137 746 aaKnown RBP5.46□□□□□ -1.54
VPS54-204ENST00000416400 ALFQ53S48 1182 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 CACHD1Q5VU97 1274 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 ARL6IP4Q66PJ3 421 aaKnown RBP5.46□□□□□ -1.54
VPS54-204ENST00000416400 PLAG1Q6DJT9 500 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms