RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ZMIZ2Q8NF64 920 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 GPR152Q8TDT2 470 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 EPS8L1Q8TE68 723 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 SEPT5Q99719 369 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-204ENST00000401473 SMOQ99835 787 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 MED10Q9BTT4 135 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 PRDM6Q9NQX0 595 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 CLDND1Q9NY35 253 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.9■□□□□ 0.3
HMGA1-204ENST00000401473 PRRG1O14668 218 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 THAP12O43422 761 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 ATF6P18850 670 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 SKIV2LQ15477 1246 aaKnown RBP16.9■□□□□ 0.3
HMGA1-204ENST00000401473 SDHAF4Q5VUM1 108 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 LCLAT1Q6UWP7 414 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 CLEC20AQ6ZU45 233 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 C12orf76Q8N812 135 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-204ENST00000401473 STKLD1Q8NE28 680 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 UBA3Q8TBC4 463 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 PABPC5Q96DU9 382 aaKnown RBP16.9■□□□□ 0.3
HMGA1-204ENST00000401473 IQCDQ96DY2 449 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 CSNK1G1Q9HCP0 422 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 HSFX1Q9UBD0 423 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 NOCTQ9UK39 431 aaKnown RBP16.9■□□□□ 0.3
HMGA1-204ENST00000401473 MAFFQ9ULX9 164 aa16.9■□□□□ 0.3
HMGA1-204ENST00000401473 GREB1Q4ZG55 1949 aa16.89■□□□□ 0.3
HMGA1-204ENST00000401473 F8VP50 259 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 TULP2O00295 520 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 AP1G2O75843 785 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 GRIK1P39086 918 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 MAGEA11P43364 429 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 TUFMP49411 452 aaKnown RBP16.89■□□□□ 0.29
HMGA1-204ENST00000401473 MRE11P49959 708 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 BPIFB4P59827 614 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 VSTM1Q6UX27 236 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 EP400NLQ6ZTU2 488 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 ANKRD52Q8NB46 1076 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 SLC20A1Q8WUM9 679 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 DUSP16Q9BY84 665 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 KRT82Q9NSB4 513 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 INSL5Q9Y5Q6 135 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 ZNF638Q14966 1978 aaKnown RBP16.89■□□□□ 0.29
HMGA1-204ENST00000401473 MUC3AQ02505 3323 aa16.89■□□□□ 0.29
HMGA1-204ENST00000401473 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.88■□□□□ 0.29
HMGA1-204ENST00000401473 ZMYND10O75800 440 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 MICAL2O94851 1124 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 SKILP12757 684 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 CHRNB2P17787 502 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 CDC25BP30305 580 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 MAP3K7CLP57077 242 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 TWF1Q12792 350 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 GOLGA7BQ2TAP0 167 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 SFMBT2Q5VUG0 894 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 SYCE2Q6PIF2 218 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 SCN4BQ8IWT1 228 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 WDTC1Q8N5D0 677 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 ZNF397Q8NF99 534 aaPredicted RBP16.88■□□□□ 0.29
HMGA1-204ENST00000401473 HDAC7Q8WUI4 952 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 SMARCD1Q96GM5 515 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 DNAI2Q9GZS0 605 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 YIPF1Q9Y548 306 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 NOTCH4Q99466 2003 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 CCDC195A0A1B0GUA6 201 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 NCK2O43639 380 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 TRIOO75962 3097 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 MMEP08473 750 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 PDE4CQ08493 712 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 TRIM14Q14142 442 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 ARID5BQ14865 1188 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 LIN9Q5TKA1 542 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 TAF3Q5VWG9 929 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 HGSNATQ68CP4 663 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 WDR59Q6PJI9 974 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 CCDC149Q6ZUS6 474 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 TC2NQ8N9U0 490 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 SPC24Q8NBT2 197 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 OLIG1Q8TAK6 271 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 GIPC2Q8TF65 315 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 CASP10Q92851 521 aa16.88■□□□□ 0.29
HMGA1-204ENST00000401473 HHLA1C9JL84 531 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 MFAP3LO75121 409 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 FAM200BP0CF97 657 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 FERP16591 822 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 NPR3P17342 541 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 GPD2P43304 727 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 ANKRD54Q6NXT1 300 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 DENND1BQ6P3S1 775 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 TMC5Q6UXY8 1006 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 OR8K1Q8NGG5 319 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 SLC35F5Q8WV83 523 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 SYN2Q92777 582 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-204ENST00000401473 ZNF707Q96C28 371 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-204ENST00000401473 DNAJC7Q99615 494 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 SYT11Q9BT88 431 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 HAUS4Q9H6D7 363 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 UBE2ZQ9H832 354 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-204ENST00000401473 CYTH4Q9UIA0 394 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 CDH22Q9UJ99 828 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 PCDHGC3Q9UN70 934 aa16.87■□□□□ 0.29
HMGA1-204ENST00000401473 C2orf16Q68DN1 1984 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms