RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CCND1P24385 295 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 ADSSP30520 456 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 SULT1E1P49888 294 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 NDUFAF2Q8N183 169 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 CCDC33Q8N5R6 958 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 TMEM134Q9H6X4 195 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 ABCF3Q9NUQ8 709 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 HAO1Q9UJM8 370 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 GGA2Q9UJY4 613 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 KDSRQ06136 332 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 MDH1BQ5I0G3 518 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 NLRP9Q7RTR0 991 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 CPNE8Q86YQ8 564 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 FUKQ8N0W3 1084 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 MID2Q9UJV3 735 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 TMEM59LQ9UK28 342 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 R3HDM2Q9Y2K5 976 aaKnown RBP19.35■□□□□ 0.69
USP48-204ENST00000400301 PABPN1LA6NDY0 278 aaKnown RBP19.34■□□□□ 0.69
USP48-204ENST00000400301 MMP13P45452 471 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 MROH9Q5TGP6 573 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 SNX3O60493 162 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 PDHA1P08559 390 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 CA8P35219 290 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 RFC1P35251 1148 aaPredicted RBP19.34■□□□□ 0.69
USP48-204ENST00000400301 EPHB1P54762 984 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 ERO1BQ86YB8 467 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 PHF13Q86YI8 300 aaPredicted RBP19.34■□□□□ 0.69
USP48-204ENST00000400301 APPL2Q8NEU8 664 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 RARBP10826 455 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 INSRRP14616 1297 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 SLC26A2P50443 739 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 C1orf146Q5VVC0 180 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 FAM172AQ8WUF8 416 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 SLITRK1Q96PX8 696 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 CCDC88AQ3V6T2 1871 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 CHD4Q14839 1912 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 ATP9BO43861 1147 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 CCDC22O60826 627 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 ENO1P06733 434 aaKnown RBP19.34■□□□□ 0.69
USP48-204ENST00000400301 PGM1P36871 562 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 DENND1BQ6P3S1 775 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 ABHD15Q6UXT9 468 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 CNPY4Q8N129 248 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 ARMC2Q8NEN0 867 aa19.34■□□□□ 0.69
USP48-204ENST00000400301 GSTA2P09210 222 aa19.33■□□□□ 0.69
USP48-204ENST00000400301 RPS6KA2Q15349 733 aa19.33■□□□□ 0.69
USP48-204ENST00000400301 ZNF484Q5JVG2 852 aa19.33■□□□□ 0.69
USP48-204ENST00000400301 CYP3A43Q9HB55 503 aa19.33■□□□□ 0.69
USP48-204ENST00000400301 RXFP1Q9HBX9 757 aa19.33■□□□□ 0.69
USP48-204ENST00000400301 PPP1R12AO14974 1030 aaPredicted RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 LIASO43766 372 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 GCLCP48506 637 aaPredicted RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 STX3Q13277 289 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 MMEL1Q495T6 779 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 TTC39BQ5VTQ0 682 aaPredicted RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 FHDC1Q9C0D6 1143 aaPredicted RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 KIAA1257Q9ULG3 409 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 CFLARO15519 480 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 HNRNPCL1O60812 293 aaKnown RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 MIPP30301 263 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 HADHBP55084 474 aaKnown RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 TAF1BQ53T94 588 aaPredicted RBP19.33■□□□□ 0.68
USP48-204ENST00000400301 DCAF6Q58WW2 860 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 RASSF3Q86WH2 238 aa19.33■□□□□ 0.68
USP48-204ENST00000400301 SPDYE16A6NNV3 312 aaPredicted RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 KCNA2P16389 499 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 ALDH18A1P54886 795 aaKnown RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 SNAPC2Q13487 334 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 ZNF268Q14587 947 aaPredicted RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 KIZQ2M2Z5 673 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 DCAF12L1Q5VU92 463 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 RNF139Q8WU17 664 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 CKAP2Q8WWK9 683 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 TTC1Q99614 292 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 FRMD8Q9BZ67 464 aaPredicted RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 ARHGAP28Q9P2N2 729 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 SCOCQ9UIL1 159 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 ELF1P32519 619 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 GPRC5AQ8NFJ5 357 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 DTX3LQ8TDB6 740 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 SIK2Q9H0K1 926 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 MTO1Q9Y2Z2 717 aaKnown RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 GRIN2DO15399 1336 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 MYH14Q7Z406 1995 aaKnown RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 DHX15O43143 795 aaKnown RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 ELK3P41970 407 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 PTGIRP43119 386 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 NDST1P52848 882 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.32■□□□□ 0.68
USP48-204ENST00000400301 ARID3BQ8IVW6 561 aaPredicted RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 HEY2Q9UBP5 337 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 INPP5FQ9Y2H2 1132 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 CYP2C9P11712 490 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 GNL1P36915 607 aaPredicted RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 SERPINB9P50453 376 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 RASIP1Q5U651 963 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 MCUQ8NE86 351 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 FAM193BQ96PV7 902 aaPredicted RBP19.32■□□□□ 0.68
USP48-204ENST00000400301 TSPAN16Q9UKR8 245 aa19.32■□□□□ 0.68
USP48-204ENST00000400301 TAF1P21675 1872 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms