RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 RPS6KA3P51812 740 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 MRPS6P82932 125 aaKnown RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 SYCP2LQ5T4T6 812 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 FAM102AQ5T9C2 384 aaPredicted RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 SEL1L2Q5TEA6 688 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 TMC3Q7Z5M5 1100 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 ZNF410Q86VK4 478 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 LRRN4Q8WUT4 740 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 SLC40A1Q9NP59 571 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 NOVA2Q9UNW9 492 aaKnown RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 SMIM23A6NLE4 172 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 CLDN5O00501 218 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 ABLIM1O14639 778 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 MAPK13O15264 365 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 IL18RAPO95256 599 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 LMO2P25791 158 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 CCDC105Q8IYK2 499 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 MCOLN2Q8IZK6 566 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 DDX3YO15523 660 aaKnown RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 IFT88Q13099 833 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 ENOSF1Q7L5Y1 443 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 APBB1IPQ7Z5R6 666 aaPredicted RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 SCUBE3Q8IX30 993 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 ARFGAP2Q8N6H7 521 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 HSPH1Q92598 858 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 EMID1Q96A84 441 aaPredicted RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 B3GNT5Q9BYG0 378 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 ELOVL4Q9GZR5 314 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 HESX1Q9UBX0 185 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 GTF2IRD1Q9UHL9 959 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 SLC12A6Q9UHW9 1150 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 UTP11Q9Y3A2 253 aaKnown RBP13.75□□□□□ -0.21
COL18A1-201ENST00000342220 HUS1O60921 280 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 FAM107AO95990 144 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 IFNB1P01574 187 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 KRT10P13645 584 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ACLYP53396 1101 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 POU5F1Q01860 360 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 SOX4Q06945 474 aaPredicted RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 CTU1Q7Z7A3 348 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 RHOT2Q8IXI1 618 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 MAGOHBQ96A72 148 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 PRDM5Q9NQX1 630 aaPredicted RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 NCANO14594 1321 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 LRRD1A4D1F6 860 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 F8VP50 259 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 F8W810 466 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 FAM189A1O60320 539 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 HMGCRP04035 888 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 TCF4P15884 667 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ACO1P21399 889 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 PTPN11Q06124 597 aaPredicted RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 CCDC13Q8IYE1 715 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 USP6NLQ92738 828 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 RSRC1Q96IZ7 334 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ZSWIM1Q9BR11 485 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ERVK-5Q9HDB9 667 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ATP8A1Q9Y2Q0 1164 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ATP8B3O60423 1300 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 TCRBV7S2A1N4TA0A589 114 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 NT5C1B-RDH14C9J2C7 533 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 B4GALT4O60513 344 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 CHRNA1P02708 482 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 PSMA2P25787 234 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 ASPAP45381 313 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 MAGOHP61326 146 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 MTMR3Q13615 1198 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 TAF5Q15542 800 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 GOLGA7BQ2TAP0 167 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 KRT71Q3SY84 523 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 SGO2Q562F6 1265 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 THEMIS2Q5TEJ8 643 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 C15orf39Q6ZRI6 1047 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 MICALCLQ6ZW33 695 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 GSTA5Q7RTV2 222 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 PRUNE1Q86TP1 453 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 NETO2Q8NC67 525 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 STKLD1Q8NE28 680 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 SCLYQ96I15 445 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 SYT11Q9BT88 431 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 CALN1Q9BXU9 219 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 XYLT2Q9H1B5 865 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 C10orf88Q9H8K7 445 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 METTL5Q9NRN9 209 aaKnown RBP13.74□□□□□ -0.21
COL18A1-201ENST00000342220 TSPAN16Q9UKR8 245 aa13.74□□□□□ -0.21
COL18A1-201ENST00000342220 PYGMP11217 842 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 TAF2Q6P1X5 1199 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 SPATS2Q86XZ4 545 aaKnown RBP13.73□□□□□ -0.21
COL18A1-201ENST00000342220 PARP9Q8IXQ6 854 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 SEC14L1Q92503 715 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 NT5C1AQ9BXI3 368 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 MAF1Q9H063 256 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 ATXN2Q99700 1313 aaKnown RBP13.73□□□□□ -0.21
COL18A1-201ENST00000342220 FKTNO75072 461 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 CDC25CP30307 473 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 BRCC3P46736 316 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 CRYBB1P53674 252 aaPredicted RBP13.73□□□□□ -0.21
COL18A1-201ENST00000342220 PPP2R2AP63151 447 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 QPCTQ16769 361 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms