RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PLA2G4FQ68DD2 849 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 PAOXQ6QHF9 649 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 CPLX4Q7Z7G2 160 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 EDAQ92838 391 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 CPB2Q96IY4 423 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 MTA3Q9BTC8 594 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 FAM49BQ9NUQ9 324 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 ASTN2O75129 1339 aaPredicted RBP8.8□□□□□ -1
HMGB1-203ENST00000341423 H0Y858 1186 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 TBX3O15119 743 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 P4HA2O15460 535 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 GJB5O95377 273 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 MX2P20592 715 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 PEX5P50542 639 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 ERCC6LQ2NKX8 1250 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 LDLRAD1Q5T700 205 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 ZNF618Q5T7W0 954 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 C17orf99Q6UX52 265 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 C15orf52Q6ZUT6 534 aaKnown RBP8.8□□□□□ -1
HMGB1-203ENST00000341423 LHX5Q9H2C1 402 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 RNF39Q9H2S5 420 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 TBC1D17Q9HA65 648 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 BMP10O95393 424 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 F9P00740 461 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 FGFR4P22455 802 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 GRM2Q14416 872 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 TFDP3Q5H9I0 405 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 TPGS2Q68CL5 300 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 ZCCHC8Q6NZY4 707 aaKnown RBP8.8□□□□□ -1
HMGB1-203ENST00000341423 ALLCQ8N6M5 410 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 LTFP02788 710 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 MCF2P10911 925 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 SFTPCP11686 197 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 UBA1P22314 1058 aaKnown RBP8.8□□□□□ -1
HMGB1-203ENST00000341423 NAMPTP43490 491 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 EXOSC10Q01780 885 aaKnown RBP8.8□□□□□ -1
HMGB1-203ENST00000341423 DSG2Q14126 1118 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 VITQ6UXI7 678 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 OR6P1Q8NGX9 317 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 GDAP1L1Q96MZ0 367 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 NDEL1Q9GZM8 345 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 SEMA6BQ9H3T3 888 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 INTS7Q9NVH2 962 aaKnown RBP8.8□□□□□ -1
HMGB1-203ENST00000341423 CLIC5Q9NZA1 410 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 STXBP5LQ9Y2K9 1186 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 CRYL1Q9Y2S2 319 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 STX7O15400 261 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 HIP1RO75146 1068 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PEX14O75381 377 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PSMA2P25787 234 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PSMD8P48556 350 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 SNRPD1P62314 119 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 PLGLB1Q02325 96 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 CYP2A13Q16696 494 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 GRASPQ7Z6J2 395 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 HJURPQ8NCD3 748 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 WFIKKN2Q8TEU8 576 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 ARMC5Q96C12 935 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 SLC39A2Q9NP94 309 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PCDHGB3Q9Y5G1 929 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PXDNLA1KZ92 1463 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 MEGF6O75095 1541 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 SYNDIG1LA6NDD5 238 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 LRRIQ3A6PVS8 624 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 HS6ST1O60243 411 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 FBXO21O94952 628 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 MATKP42679 507 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 DGKGP49619 791 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 RHBDL3P58872 404 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 TFDP2Q14188 446 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PPP1R13LQ8WUF5 828 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 TMEM125Q96AQ2 219 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 FAM163AQ96GL9 167 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 PANX2Q96RD6 677 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PNKPQ96T60 521 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 TARS2Q9BW92 718 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 NCKIPSDQ9NZQ3 722 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 CTNND2Q9UQB3 1225 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 ADGRA3Q8IWK6 1321 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 TMEM221A6NGB7 291 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 ZNF839A8K0R7 811 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 M0R296 226 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 KRIT1O00522 736 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 NMT2O60551 498 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 NFICP08651 508 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 GTF2E2P29084 291 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 GJA9P57773 515 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 LONRF1Q17RB8 773 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 GKN2Q86XP6 184 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 OR10Q1Q8NGQ4 319 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 UBLCP1Q8WVY7 318 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 KLHDC7BQ96G42 594 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 RABGEF1Q9UJ41 708 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 FAM86C2PA6NEL3 165 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 AFPP02771 609 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 CALB1P05937 261 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 MASP1P48740 699 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 MNX1P50219 401 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 TCEA2Q15560 299 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 GOLGA7BQ2TAP0 167 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms