RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TUBGCP3Q96CW5 907 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 RPAP3Q9H6T3 665 aaPredicted RBP9.03□□□□□ -0.96
RTN3-202ENST00000339997 CHST7Q9NS84 486 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 SLC5A4Q9NY91 659 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 KLK14Q9P0G3 267 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 LRFN2Q9ULH4 789 aa9.03□□□□□ -0.96
RTN3-202ENST00000339997 HSMCR30P0CW71 290 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 SLURP2P0DP57 97 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 TPH1P17752 444 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 SERPINB1P30740 379 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 PLK1P53350 603 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 FBXW4P57775 412 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 ITGA9Q13797 1035 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 ZNF235Q14590 738 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 CCDC142Q17RM4 750 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 GALNTL6Q49A17 601 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 C16orf46Q6P387 395 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 DENND1BQ6P3S1 775 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 TRIM72Q6ZMU5 477 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 PPIL6Q8IXY8 311 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 DDHD1Q8NEL9 900 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 BEST2Q8NFU1 509 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 LZICQ8WZA0 190 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 GTF3C4Q9UKN8 822 aa9.02□□□□□ -0.96
RTN3-202ENST00000339997 PIN4Q9Y237 131 aaKnown RBP9.02□□□□□ -0.96
RTN3-202ENST00000339997 CD163L1Q9NR16 1453 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 ARHGEF37A1IGU5 675 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 MAP2K7O14733 419 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 RARAP10276 462 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 ETS1P14921 441 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 PTGER2P43116 358 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 MAPRE1Q15691 268 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 PAN2Q504Q3 1202 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 CIAPIN1Q6FI81 312 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 PHF21BQ96EK2 531 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 DUSP9Q99956 384 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 PLEKHA5Q9HAU0 1116 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 USE1Q9NZ43 259 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 IQSEC2Q5JU85 1478 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 SUPT3HB4E1H0 165 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 FCHO1O14526 889 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 RIPK2O43353 540 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 BANF1O75531 89 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 ALBP02768 609 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 NR3C2P08235 984 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 ARP10275 920 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 PSMC3P17980 439 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 S100A5P33763 92 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 SPRP35270 261 aaPredicted RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 RAP1GAPP47736 663 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 NFIAQ12857 509 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 TRIM25Q14258 630 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 PKN1Q16512 942 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 TTC39BQ5VTQ0 682 aaPredicted RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 BTBD8Q5XKL5 378 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 CENPPQ6IPU0 288 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 ENOSF1Q7L5Y1 443 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 KCNK18Q7Z418 384 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 TTC30AQ86WT1 665 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 FAM131BQ86XD5 332 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 ZNF555Q8NEP9 628 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 BTN2A2Q8WVV5 523 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 MAGEB18Q96M61 343 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 MTA3Q9BTC8 594 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 C2CD2Q9Y426 696 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 PTGES3LE9PB15 166 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 SLC16A3O15427 465 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 DCXO43602 365 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 USP12O75317 370 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 RPS6KA4O75676 772 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 POLBP06746 335 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 TGM2P21980 687 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 POU1F1P28069 291 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 SARSP49591 514 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 MTHFD1LQ6UB35 978 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 AENQ8WTP8 325 aaKnown RBP9.02□□□□□ -0.97
RTN3-202ENST00000339997 GRIP2Q9C0E4 1043 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 MTMR12Q9C0I1 747 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 KDM4CQ9H3R0 1056 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 RXFP1Q9HBX9 757 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 TAS2R14Q9NYV8 317 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 PDP2Q9P2J9 529 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 FBXO40Q9UH90 709 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 NARFQ9UHQ1 456 aa9.02□□□□□ -0.97
RTN3-202ENST00000339997 PNPLA6Q8IY17 1366 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 EFCAB6Q5THR3 1501 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 MAFGO15525 162 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 SRP72O76094 671 aaKnown RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 PROCP04070 461 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 PECAM1P16284 738 aaPredicted RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 ADSLP30566 484 aaPredicted RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 HSD17B4P51659 736 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 PRKCEQ02156 737 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 PIGHQ14442 188 aaPredicted RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 TAF5Q15542 800 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 FAM182AQ5T1J6 154 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 GJC2Q5T442 439 aaPredicted RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 ITPRIPL1Q6GPH6 555 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ZBTB49Q6ZSB9 765 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 P3H2Q8IVL5 708 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms