RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MYH7BA7E2Y1 1941 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 CENPFP49454 3210 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 CYB561D2O14569 222 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 P4HA2O15460 535 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 PFDN1O60925 122 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 LDHAP00338 332 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 ZCCHC18P0CG32 403 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 SLC1A1P43005 524 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 TFDP3Q5H9I0 405 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 RAPH1Q70E73 1250 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 CATSPER4Q7RTX7 472 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 DPP9Q86TI2 863 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 RXFP2Q8WXD0 754 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 CRYGNQ8WXF5 182 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 SEPT1Q8WYJ6 367 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 FAM136AQ96C01 138 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 TLCD1Q96CP7 247 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 DDX27Q96GQ7 796 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 MAGEB5Q9BZ81 275 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 A8MXQ7 604 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 B2RBV5 119 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 FSCN2O14926 492 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 ZMPSTE24O75844 475 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 NFICP08651 508 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 TBXAS1P24557 533 aaPredicted RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 MIPP30301 263 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 ATXN1P54253 815 aaKnown RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 LAMTOR4Q0VGL1 99 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 PDE1CQ14123 709 aaPredicted RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 CCNG2Q16589 344 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 C6orf89Q6UWU4 347 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 RNF135Q8IUD6 432 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 RAB3IL1Q8TBN0 382 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 PSMC3IPQ9P2W1 217 aaPredicted RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 HMGXB4Q9UGU5 601 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 TIMM13Q9Y5L4 95 aaPredicted RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 NUDT17P0C025 328 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 FDX1P10109 184 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 RARBP10826 455 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 MYL2P10916 166 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 PTGER2P43116 358 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 WDR4P57081 412 aaKnown RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 POU5F1Q01860 360 aaKnown RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 OGDHQ02218 1023 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 GEN1Q17RS7 908 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 TTC7BQ86TV6 843 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 RNF148Q8N7C7 305 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 SGF29Q96ES7 293 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 TSR3Q9UJK0 312 aaKnown RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 PLIN4Q96Q06 1357 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 FAM237BA0A1B0GVD1 139 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 ADM5C9JUS6 153 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 H0YCG3 227 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 HCRTO43612 131 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 CIB2O75838 187 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 UBA1P22314 1058 aaKnown RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 SDC4P31431 198 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 CHI3L2Q15782 390 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 TREML2Q5T2D2 321 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 TRPM4Q8TD43 1214 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 DDX50Q9BQ39 737 aaKnown RBP12.48□□□□□ -0.41
USP1-201ENST00000339950 EPB41L4BQ9H329 900 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 AAASQ9NRG9 546 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 CYP39A1Q9NYL5 469 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 CEP350Q5VT06 3117 aa12.48□□□□□ -0.41
USP1-201ENST00000339950 MT-CO1P00395 513 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 TCN1P20061 433 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 AKAP5P24588 427 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 ACAT1P24752 427 aaKnown RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 PTPN20Q4JDL3 420 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 SWT1Q5T5J6 900 aaKnown RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 SLC9A9Q8IVB4 645 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 MIPOL1Q8TD10 442 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 EXT2Q93063 718 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 PGBD4Q96DM1 585 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 R3HDMLQ9H3Y0 253 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 LRRC19Q9H756 370 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 CACNG4Q9UBN1 327 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 DDNO94850 711 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 VNN1O95497 513 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 RPL22P35268 128 aaKnown RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 SATB1Q01826 763 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 THOC5Q13769 683 aaKnown RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 PLCB4Q15147 1175 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 RCN1Q15293 331 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 FNBP1LQ5T0N5 605 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 DPY19L2P1Q6NXN4 242 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 ENOSF1Q7L5Y1 443 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 RFWD2Q8NHY2 731 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 PPP4R1Q8TF05 950 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 CKAP2Q8WWK9 683 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 HPDLQ96IR7 371 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 SLITRK1Q96PX8 696 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 CPXM1Q96SM3 734 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 ROPN1BQ9BZX4 212 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 MANSC1Q9H8J5 431 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 ROPN1Q9HAT0 212 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 MYH1P12882 1939 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 MYH4Q9Y623 1939 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 UBR2Q8IWV8 1755 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms