RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 C4orf33Q8N1A6 199 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PALMDQ9NP74 551 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 RIPK2O43353 540 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 GPSM2P81274 684 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PKN2Q16513 984 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 USP49Q70CQ1 688 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 KRT27Q7Z3Y8 459 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 THAP2Q9H0W7 228 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM124BQ9H5Z6 455 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TASP1Q9H6P5 420 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FRMPD4Q14CM0 1322 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 ANKRD65E5RJM6 399 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CD44P16070 742 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 EPS8Q12929 822 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TMCO1Q9UM00 188 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM205AQ6ZU69 1335 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 ERI2A8K979 691 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 EEF2KO00418 725 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 RANBP1P43487 201 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 KCNMA1Q12791 1236 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PID1Q7Z2X4 250 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CELF4Q9BZC1 486 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CEP44Q9C0F1 390 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 RGL1Q9NZL6 768 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TJP2Q9UDY2 1190 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 LAMA4Q16363 1823 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CST8O60676 142 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 DNAJC3Q13217 504 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 C1orf228Q6PIY5 440 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 C9orf72Q96LT7 481 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CDK5RAP1Q96SZ6 601 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 BTBD10Q9BSF8 475 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 ADNPQ9H2P0 1102 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 ERAP1Q9NZ08 941 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PRR12Q9ULL5 1215 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PCDHA3Q9Y5H8 950 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 H3BQF6 201 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PDAP1Q13442 181 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 ITGA9Q13797 1035 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 LRRC38Q5VT99 294 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 KYQ8NBH2 561 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 RIN2Q8WYP3 895 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 DACH2Q96NX9 599 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TLR10Q9BXR5 811 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 SYBUQ9NX95 663 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FARP1Q9Y4F1 1045 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 NID2Q14112 1375 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM205CA6NFA0 338 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TRIM49D1C9J1S8 452 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CAND2O75155 1236 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TADA1Q96BN2 335 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CLMNQ96JQ2 1002 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CNDP1Q96KN2 507 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 RRN3P2A6NIE6 340 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC34A1Q06495 639 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 GIT2Q14161 759 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 RASA2Q15283 850 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 PCBP1Q15365 356 aaKnown RBP eCLIP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 BTBD8Q5XKL5 378 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF720Q7Z2F6 126 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 WDR49Q8IV35 697 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SPDYE1Q8NFV5 336 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ARL8AQ96BM9 186 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ACAT1P24752 427 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SULT1E1P49888 294 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 DDR1Q08345 913 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CLEC16AQ2KHT3 1053 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ANKMY2Q8IV38 441 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 A1CFQ9NQ94 594 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CDV3Q9UKY7 258 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ECM2O94769 699 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 RALBP11234 206 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 RGS2P41220 211 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 RNF43Q68DV7 783 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 STYK1Q6J9G0 422 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 KATNAL2Q8IYT4 538 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 NDEL1Q9GZM8 345 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 GANQ9H2C0 597 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 TRPC7Q9HCX4 862 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 HACD1B0YJ81 288 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SOAT2O75908 522 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 PRKCEQ02156 737 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 NOTUMQ6P988 496 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 EPS8L3Q8TE67 593 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CYGBQ8WWM9 190 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CNBD2Q96M20 576 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 MMP19Q99542 508 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 KCNH7Q9NS40 1196 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 GLI1P08151 1106 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 PLEKP08567 350 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 MMP10P09238 476 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 NNMTP40261 264 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 PTGER2P43116 358 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ITGB3BPQ13352 177 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CLEC4FQ8N1N0 589 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC30A5Q8TAD4 765 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 LACRTQ9GZZ8 138 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 C20orf96Q9NUD7 363 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CHMP2BQ9UQN3 213 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 C15orf38-AP3S2A0A0A6YYH1 394 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms