RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 ZNF473Q8WTR7 871 aaKnown RBP10.59□□□□□ -0.71
CHD3-201ENST00000330494 FAM172AQ8WUF8 416 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 TEKT4Q8WW24 435 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 CASKIN2Q8WXE0 1202 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 CDCA5Q96FF9 252 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 KCTD10Q9H3F6 313 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 TUT1Q9H6E5 874 aaKnown RBP10.59□□□□□ -0.71
CHD3-201ENST00000330494 LMNAP02545 664 aaKnown RBP10.59□□□□□ -0.71
CHD3-201ENST00000330494 POLBP06746 335 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 THP07101 528 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 MBL2P11226 248 aaPredicted RBP10.59□□□□□ -0.71
CHD3-201ENST00000330494 PGM1P36871 562 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 CYP24A1Q07973 514 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 HOMEZQ8IX15 550 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 KIAA2013Q8IYS2 634 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 TAGAPQ8N103 731 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 CISHQ9NSE2 258 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 CNTNAP2Q9UHC6 1331 aa10.59□□□□□ -0.71
CHD3-201ENST00000330494 HIST1H2AGP0C0S8 130 aaPredicted RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 HIST1H2ADP20671 130 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 CPA2P48052 419 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 GRIK4Q16099 956 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ACBD5Q5T8D3 534 aaPredicted RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 TTC39BQ5VTQ0 682 aaPredicted RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 MTHFD1LQ6UB35 978 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 HIST1H2AHQ96KK5 128 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 HIST1H2AJQ99878 128 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ERP44Q9BS26 406 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 TMEM121Q9BTD3 319 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 H2AFJQ9BTM1 129 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 AFDNP55196 1824 aaKnown RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 TTLL13PA6NNM8 815 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 TISP43B9A030 160 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 KDM1AO60341 852 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 PTGER2P43116 358 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 CTXN3Q4LDR2 81 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 RDM1Q8NG50 284 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 PDCD2LQ9BRP1 358 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 COLEC11Q9BWP8 271 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ASCC2Q9H1I8 757 aaPredicted RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 STARD7Q9NQZ5 370 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 BCL9O00512 1426 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 A0A087X0B3 334 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 TMEM120BA0PK00 339 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 RRM1P23921 792 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 CHI3L2Q15782 390 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 APOBEC3HQ6NTF7 200 aaKnown RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 PCDHGB4Q9UN71 923 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 RHOBTB1O94844 696 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ASS1P00966 412 aaKnown RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 DSG3P32926 999 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.58□□□□□ -0.72
CHD3-201ENST00000330494 VWDEQ8N2E2 1590 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 VIL1P09327 827 aaKnown RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 GHRP10912 638 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ADCYAP1R1P41586 468 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ZNF571Q7Z3V5 609 aaPredicted RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 ICA1LQ8NDH6 482 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ADAM32Q8TC27 787 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 DPF3Q92784 378 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 NRBF2Q96F24 287 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 KBTBD4Q9NVX7 518 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 PCDHB8Q9UN66 801 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 EML1O00423 815 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 TRIM66O15016 1216 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ANGPT2O15123 496 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 LONP2Q86WA8 852 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ZNF677Q86XU0 584 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 KIF2BQ8N4N8 673 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 EPS8L3Q8TE67 593 aaKnown RBP10.58□□□□□ -0.72
CHD3-201ENST00000330494 ASPSCR1Q9BZE9 553 aa10.58□□□□□ -0.72
CHD3-201ENST00000330494 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 PSMD3O43242 534 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 OVGP1Q12889 678 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 ZNF177Q13360 481 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 MOB2Q70IA6 237 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 ARHGEF19Q8IW93 802 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 REXO1L1PQ8IX06 675 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 NR1H4Q96RI1 486 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 MTIF3Q9H2K0 278 aaKnown RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 ATP5HO75947 161 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 GJB6O95452 261 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 CCDC159P0C7I6 412 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 PNPLA4P41247 253 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 GLRBP48167 497 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 ALDH5A1P51649 535 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 DACT2Q5SW24 774 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 FOPNLQ96NB1 174 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 PDGFDQ9GZP0 370 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 MORC2Q9Y6X9 1032 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 VEGFAP15692 232 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 PTPN7P35236 360 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 SEC24CP53992 1094 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 SNRPFP62306 86 aaKnown RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 EPN3Q9H201 632 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 EHD4Q9H223 541 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 ZNF212Q9UDV6 495 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 USP18Q9UMW8 372 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 ZNF197O14709 1029 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 TSPAN3O60637 253 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms