RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CLK1P49759 484 aaKnown RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 PDK2Q15119 407 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 FAM162AQ96A26 154 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 LRRIQ1Q96JM4 1722 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 NAT9Q9BTE0 207 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 GPBP1L1Q9HC44 474 aaPredicted RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 RIC8BQ9NVN3 520 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 PCDHA3Q9Y5H8 950 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 CCDC78A2IDD5 438 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 BAATQ14032 418 aaPredicted RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 NFIXQ14938 502 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 ERMARDQ5T6L9 678 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 XRRA1Q6P2D8 792 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 ARHGAP22Q7Z5H3 698 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 CBWD2Q8IUF1 395 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 OXNAD1Q96HP4 312 aaPredicted RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 VPS50Q96JG6 964 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 TMEM121Q9BTD3 319 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 TCRBV5S4A2TA0A5A2 114 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 SDR42E2A6NKP2 422 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 BNIP3LO60238 219 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 FAM58BPP0C7Q3 252 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 HLA-DPA1P20036 260 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 RPS6P62753 249 aaKnown RBP13.33□□□□□ -0.27
COL3A1-201ENST00000304636 PTK6Q13882 451 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 MTFR1Q15390 333 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 FAM83EQ2M2I3 478 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 PDPK2PQ6A1A2 396 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 LINC00523Q86TU6 105 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 SLC47A2Q86VL8 602 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 SH3TC2Q8TF17 1288 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 IL1RL2Q9HB29 575 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 SIK3Q9Y2K2 1263 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 SNX13Q9Y5W8 968 aa13.33□□□□□ -0.27
COL3A1-201ENST00000304636 ZBTB24O43167 697 aaPredicted RBP13.33□□□□□ -0.28
COL3A1-201ENST00000304636 RALBP11234 206 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 SREBF1P36956 1147 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 CRAMP1Q96RY5 1269 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 ATXN2Q99700 1313 aaKnown RBP13.33□□□□□ -0.28
COL3A1-201ENST00000304636 A0A0U1RQJ8 604 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 FCHO1O14526 889 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 DNALI1O14645 258 aaPredicted RBP13.33□□□□□ -0.28
COL3A1-201ENST00000304636 TIMM44O43615 452 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 SNX3O60493 162 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 FAXCQ5TGI0 409 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 SEL1L3Q68CR1 1132 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 SHCBP1Q8NEM2 672 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 USP33Q8TEY7 942 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 PAWRQ96IZ0 340 aaKnown RBP13.33□□□□□ -0.28
COL3A1-201ENST00000304636 ZFRQ96KR1 1074 aaKnown RBP13.33□□□□□ -0.28
COL3A1-201ENST00000304636 SIKE1Q9BRV8 207 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 RNPEPL1Q9HAU8 725 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 SOX13Q9UN79 622 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 ERCC6L2Q5T890 1561 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 KANSL1LA0AUZ9 987 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 FGFR2P21802 821 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC85BQ15834 202 aaPredicted RBP13.33□□□□□ -0.28
COL3A1-201ENST00000304636 STRIP1Q5VSL9 837 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 UBA3Q8TBC4 463 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 CATSPER2Q96P56 530 aa13.33□□□□□ -0.28
COL3A1-201ENST00000304636 TBL3Q12788 808 aaKnown RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TKFCQ3LXA3 575 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TRIM60Q495X7 471 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 ATF7IP2Q5U623 682 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 IYDQ6PHW0 289 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 PATL1Q86TB9 770 aaKnown RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 DNAAF5Q86Y56 855 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC126Q96EE4 140 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 CBWD1Q9BRT8 395 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TRIM45Q9H8W5 580 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 RPS6KL1Q9Y6S9 549 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 DEPDC5O75140 1603 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 MYO1GB0I1T2 1018 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 DDX3XO00571 662 aaKnown RBP eCLIP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 MYL3P08590 195 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 RARAP10276 462 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 PYGMP11217 842 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 RUNX1T1Q06455 604 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 SZRD1Q7Z422 152 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 RFWD2Q8NHY2 731 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 AGAP11Q8TF27 550 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 LRRC4BQ9NT99 713 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 LSM8O95777 96 aaKnown RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 VCAM1P19320 739 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 GARTP22102 1010 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 VCPP55072 806 aaKnown RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 GOLGA7BQ2TAP0 167 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 MICU2Q8IYU8 434 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TCP10LQ8TDR4 215 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 CKAP2Q8WWK9 683 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 SEPT1Q8WYJ6 367 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF184Q99676 751 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 RBBP8Q99708 897 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 C17orf80Q9BSJ5 609 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 APPL1Q9UKG1 709 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 STARD13Q9Y3M8 1113 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 CYP2C8P10632 490 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TGM2P21980 687 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TAGAPQ8N103 731 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms