RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 AIM2O14862 343 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ASAP2O43150 1006 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CLK2P49760 499 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ANTXR2P58335 489 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ERVK-9P63128 1117 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ERVK-24P63145 666 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 VAC14Q08AM6 782 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FRMD5Q7Z6J6 570 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 B3GALNT2Q8NCR0 500 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 TSEN34Q9BSV6 310 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 AASDHPPTQ9NRN7 309 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 GOLGA8TH3BQL2 631 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 TBX3O15119 743 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CLCN6P51797 869 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PMS1P54277 932 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 ANKS6Q68DC2 871 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PIK3R5Q8WYR1 880 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 OMDQ99983 421 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 BPIFA1Q9NP55 256 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 hCG_2014768A0A024R1R8 64 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CUL4AQ13619 759 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 C3orf62Q6ZUJ4 267 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 RIN3Q8TB24 985 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 EML4Q9HC35 981 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 KDM6AO15550 1401 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CCL16O15467 120 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 H2AFYO75367 372 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 MCF2P10911 925 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 IMPDH2P12268 514 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PSEN2P49810 448 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 APBA1Q02410 837 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PATL1Q86TB9 770 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 TATDN2Q93075 761 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 SOHLH2Q9NX45 425 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 STK36Q9NRP7 1315 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 GPR75-ASB3A0A0A6YYF3 556 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 HSPA8P11142 646 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 MLNP12872 115 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 ALDH5A1P51649 535 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CAMK2GQ13555 558 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 IKBKEQ14164 716 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CLEC16AQ2KHT3 1053 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PLA2G4EQ3MJ16 856 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 TRMT2AQ8IZ69 625 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 RNF112Q9ULX5 631 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 UBQLN1Q9UMX0 589 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 UBXN8O00124 270 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 IL18RAPO95256 599 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 GRIK5Q16478 980 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CGRRF1Q99675 332 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 THAP2Q9H0W7 228 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 ECT2Q9H8V3 914 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 KLHL3Q9UH77 587 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PNPLA7Q6ZV29 1317 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 LOC100653049A0A140TA62 436 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 KRT34O76011 436 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 MYBL1P10243 752 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 RCOR2Q8IZ40 523 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PROM2Q8N271 834 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 GALNT4Q8N4A0 578 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 HELQQ8TDG4 1101 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 UCMAQ8WVF2 138 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 TEX12Q9BXU0 123 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 AGO4Q9HCK5 861 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 ZC3H7BQ9UGR2 993 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 MPZL3Q6UWV2 235 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 PARGQ86W56 976 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 ANKRD49Q8WVL7 239 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 DDX4Q9NQI0 724 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 NEU2Q9Y3R4 380 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 NR2E3Q9Y5X4 410 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 CNTNAP5Q8WYK1 1306 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 UCHL3P15374 230 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 TFB1MQ8WVM0 346 aaKnown RBP8.11□□□□□ -1.11
SCN9A-201ENST00000303354 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.11□□□□□ -1.113e-9■■□□□ 14.2
SCN9A-201ENST00000303354 IL25Q9H293 177 aa8.11□□□□□ -1.11
SCN9A-201ENST00000303354 RPAP1Q9BWH6 1393 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 ARHGAP31Q2M1Z3 1444 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 TARSL2A2RTX5 802 aaKnown RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 LTFP02788 710 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 USP17L7P0C7H9 530 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 HSPA1AP0DMV8 641 aaKnown RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 HSPA1BP0DMV9 641 aaKnown RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 HPGDP15428 266 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 HALP42357 657 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 GCLCP48506 637 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 AP3M2P53677 418 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 CEP70Q8NHQ1 597 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 ARNTL2Q8WYA1 636 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 ARHGEF26Q96DR7 871 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 H2AFY2Q9P0M6 372 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 FKTNO75072 461 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 BOP1Q14137 746 aaKnown RBP8.1□□□□□ -1.11
SCN9A-201ENST00000303354 FSCBQ5H9T9 825 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 LGI2Q8N0V4 545 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 DEFB119Q8N690 84 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 FAM172AQ8WUF8 416 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 USP6NLQ92738 828 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 TRIM9Q9C026 710 aa8.1□□□□□ -1.11
SCN9A-201ENST00000303354 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms