RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ADORA2AP29274 412 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 CRADDP78560 199 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 FAAP100Q0VG06 881 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 Q3C1V9 767 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 TRMT10BQ6PF06 316 aaKnown RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 MPP5Q8N3R9 675 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ARHGEF4Q9NR80 690 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 PPP1R1BQ9UD71 204 aaPredicted RBP11.23□□□□□ -0.61
USP28-201ENST00000003302 SIX4Q9UIU6 781 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 EXOC7Q9UPT5 735 aa11.23□□□□□ -0.61
USP28-201ENST00000003302 ENO4A6NNW6 628 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 ZBTB42B2RXF5 422 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 NEBLO76041 1014 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 KITP10721 976 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 CD19P15391 556 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 UBA1P22314 1058 aaKnown RBP11.22□□□□□ -0.61
USP28-201ENST00000003302 ELK3P41970 407 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 CA9Q16790 459 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 RNF43Q68DV7 783 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 DNAJC24Q6P3W2 148 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 TREML1Q86YW5 311 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 MAGEC3Q8TD91 643 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 CALN1Q9BXU9 219 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 NSRP1Q9H0G5 558 aaKnown RBP11.22□□□□□ -0.61
USP28-201ENST00000003302 ALOX15BO15296 676 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 C1QAP02745 245 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 ZC3H12AQ5D1E8 599 aaKnown RBP11.22□□□□□ -0.61
USP28-201ENST00000003302 TFDP3Q5H9I0 405 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 MAP1SQ66K74 1059 aaPredicted RBP11.22□□□□□ -0.61
USP28-201ENST00000003302 RINLQ6ZS11 566 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 MCF2L2Q86YR7 1114 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 CCDC125Q86Z20 511 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 EFCAB3Q8N7B9 438 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 TTC17Q96AE7 1141 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 SPDL1Q96EA4 605 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 ACAP3Q96P50 834 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 PARVAQ9NVD7 372 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 MRPL42Q9Y6G3 142 aaKnown RBP11.22□□□□□ -0.61
USP28-201ENST00000003302 KBTBD13C9JR72 458 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 KRT19P08727 400 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 HOXC6P09630 235 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 SUPT20HL2P0C7V6 817 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 SLC1A1P43005 524 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 YARSP54577 528 aaKnown RBP11.22□□□□□ -0.61
USP28-201ENST00000003302 STRN3Q13033 797 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 PEX6Q13608 980 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 HIF1AQ16665 826 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 SUPT20HL1Q3ZLR7 823 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 ANO7Q6IWH7 933 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 MICAL1Q8TDZ2 1067 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.22□□□□□ -0.61
USP28-201ENST00000003302 NME7Q9Y5B8 376 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 STYXL1Q9Y6J8 313 aa11.22□□□□□ -0.61
USP28-201ENST00000003302 TCRBV9S1A1TA0A576 114 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 HMX2A2RU54 273 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 NFICP08651 508 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 LINGO3P0C6S8 592 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 PYGBP11216 843 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 ATP2A2P16615 1042 aaKnown RBP11.21□□□□□ -0.61
USP28-201ENST00000003302 PTPRAP18433 802 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 ARL2P36404 184 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 RAD23BP54727 409 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 BACE1P56817 501 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 STAT4Q14765 748 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 ACSBG2Q5FVE4 666 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 C1orf228Q6PIY5 440 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 FAM83AQ86UY5 434 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 SLC25A41Q8N5S1 370 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 SYT15Q9BQS2 421 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 CEP41Q9BYV8 373 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 IMPG2Q9BZV3 1241 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 TMPRSS4Q9NRS4 437 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 GJA3Q9Y6H8 435 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 COL2A1P02458 1487 aaPredicted RBP11.21□□□□□ -0.61
USP28-201ENST00000003302 GABBR2O75899 941 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 AMPD1P23109 780 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 SFNP31947 248 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 PTDSS1P48651 473 aaKnown RBP11.21□□□□□ -0.61
USP28-201ENST00000003302 EML3Q32P44 896 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 SH2D5Q6ZV89 423 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 PAXIP1Q6ZW49 1069 aaPredicted RBP11.21□□□□□ -0.61
USP28-201ENST00000003302 RNF149Q8NC42 400 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 DEPTORQ8TB45 409 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 USP6NLQ92738 828 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 P3H4Q92791 437 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 B3GNT5Q9BYG0 378 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 SHCBP1LQ9BZQ2 653 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 NMUR2Q9GZQ4 415 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 HEY2Q9UBP5 337 aa11.21□□□□□ -0.61
USP28-201ENST00000003302 IGFBP6P24592 240 aaPredicted RBP11.21□□□□□ -0.62
USP28-201ENST00000003302 MIPP30301 263 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 ATP11AP98196 1134 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 IL9RQ01113 521 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 HACE1Q8IYU2 909 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 DDX50Q9BQ39 737 aaKnown RBP11.21□□□□□ -0.62
USP28-201ENST00000003302 DONSONQ9NYP3 566 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 BTBD7Q9P203 1132 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 CNTN6Q9UQ52 1028 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 CFAP73A6NFT4 308 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 PSMA2P25787 234 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms