RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	RPL40B	P0CH09	128 aa	Known RBP	4.15	□□□□□ -1.74
SEC39	YLR440C	TOM6	P33448	61 aa		4.15	□□□□□ -1.74
SEC39	YLR440C	PAU16	P35994	123 aa		4.15	□□□□□ -1.74
SEC39	YLR440C	MRPL39	P36533	70 aa		4.15	□□□□□ -1.74
SEC39	YLR440C	MRPS9	P38120	278 aa		4.15	□□□□□ -1.74
SEC39	YLR440C	HSP12	P22943	109 aa	Known RBP	4.15	□□□□□ -1.75
SEC39	YLR440C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
SEC39	YLR440C	RPB7	P34087	171 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	CTP1	P38152	299 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	GGC1	P38988	300 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	PAU5	P43575	122 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	VPS25	P47142	202 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	YGL193C	P53097	103 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	ASM4	Q05166	528 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	MSB2	P32334	1306 aa		4.15	□□□□□ -1.75
SEC39	YLR440C	YIL169C	P40442	995 aa		4.14	□□□□□ -1.75
SEC39	YLR440C	YNL046W	P53956	172 aa		4.14	□□□□□ -1.75
SEC39	YLR440C	YOL159C	Q08300	171 aa		4.14	□□□□□ -1.75
SEC39	YLR440C	HTA1	P04911	132 aa	Known RBP	4.13	□□□□□ -1.75
SEC39	YLR440C	MAK32	P23060	363 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	YBR292C	P38357	123 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	YND1	P40009	630 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	YGR050C	P53231	118 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	CUZ1	P53899	274 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	YML053C	Q04978	212 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	YER175W-A	Q8TGU4	54 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	NHP2	P32495	156 aa	Predicted RBP	4.13	□□□□□ -1.75
SEC39	YLR440C	PEP8	P40335	379 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	WWM1	P43582	211 aa	Known RBP	4.13	□□□□□ -1.75
SEC39	YLR440C	POP3	P53833	195 aa	Predicted RBP	4.13	□□□□□ -1.75
SEC39	YLR440C	YDL211C	Q12121	372 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	MIC10	Q96VH5	97 aa		4.13	□□□□□ -1.75
SEC39	YLR440C	FUN19	P28003	413 aa	Predicted RBP	4.12	□□□□□ -1.75
SEC39	YLR440C	BNS1	P50084	137 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	MIC27	P50945	234 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	FHN1	P53279	174 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	YOR292C	Q08743	309 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	ATG41	Q12048	136 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	YOR376W-A	Q3E805	51 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	YFL041W-A	Q3E817	63 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	SLH1	P53327	1967 aa	Known RBP	4.12	□□□□□ -1.75
SEC39	YLR440C	RPL16A	P26784	199 aa	Known RBP	4.12	□□□□□ -1.75
SEC39	YLR440C	SWD3	P38123	315 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	TIM17	P39515	158 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	RSM19	P53733	91 aa	Predicted RBP	4.12	□□□□□ -1.75
SEC39	YLR440C	YOR186W	Q08560	144 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	YAL063C-A	Q3E791	96 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	YCL021W-A	Q96VH3	125 aa		4.12	□□□□□ -1.75
SEC39	YLR440C	MDH2	P22133	377 aa		4.11	□□□□□ -1.75
SEC39	YLR440C	LDB16	P25587	256 aa		4.11	□□□□□ -1.75
SEC39	YLR440C	PIR5	P46999	287 aa		4.11	□□□□□ -1.75
SEC39	YLR440C	NDD1	Q08887	554 aa		4.11	□□□□□ -1.75
SEC39	YLR440C	YLR112W	Q12130	139 aa		4.11	□□□□□ -1.75
SEC39	YLR440C	EMC6	Q12431	108 aa		4.11	□□□□□ -1.75
SEC39	YLR440C	URA5	P13298	226 aa	Known RBP	4.1	□□□□□ -1.75
SEC39	YLR440C	YDR042C	Q03205	200 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	TVP15	Q03860	143 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	YMR175W-A	Q3E766	64 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	FMP27	Q06179	2628 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	UMP1	P38293	148 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	YHL042W	P38729	150 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	YGR018C	P53211	109 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	RRT7	Q07829	113 aa		4.1	□□□□□ -1.75
SEC39	YLR440C	CUP1-1	P0CX80	61 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	CUP1-2	P0CX81	61 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	BET1	P22804	142 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	ERG4	P25340	473 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	OM14	P38325	134 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	FYV4	P38783	130 aa	Predicted RBP	4.09	□□□□□ -1.75
SEC39	YLR440C	ANS1	P38832	159 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	DFG10	P40526	253 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	YGL262W	P53054	175 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	MZM1	Q03429	123 aa	Predicted RBP	4.09	□□□□□ -1.75
SEC39	YLR440C	RIM9	Q04734	239 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	ELP6	Q04868	273 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	YOR385W	Q08909	290 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	TEL1	P38110	2787 aa		4.09	□□□□□ -1.75
SEC39	YLR440C	PCL5	P38794	229 aa		4.09	□□□□□ -1.76
SEC39	YLR440C	SNF11	P38956	169 aa		4.09	□□□□□ -1.76
SEC39	YLR440C	SKI6	P46948	246 aa	Predicted RBP	4.09	□□□□□ -1.76
SEC39	YLR440C	MIX14	Q04341	121 aa		4.09	□□□□□ -1.76
SEC39	YLR440C	YLR296W	Q05898	108 aa		4.09	□□□□□ -1.76
SEC39	YLR440C	YLR365W	Q7LIF2	110 aa		4.09	□□□□□ -1.76
SEC39	YLR440C	HTD2	P38790	280 aa	Known RBP	4.08	□□□□□ -1.76
SEC39	YLR440C	YFR035C	P43608	114 aa		4.08	□□□□□ -1.76
SEC39	YLR440C	SPG1	P50088	95 aa		4.08	□□□□□ -1.76
SEC39	YLR440C	NIP7	Q08962	181 aa	Known RBP	4.08	□□□□□ -1.76
SEC39	YLR440C	COX19	Q3E731	98 aa		4.08	□□□□□ -1.76
SEC39	YLR440C	NAG1	Q8TGN9	163 aa		4.08	□□□□□ -1.76
SEC39	YLR440C	BEM2	P39960	2167 aa	Known RBP	4.08	□□□□□ -1.76
SEC39	YLR440C	SEC11	P15367	167 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	FPR1	P20081	114 aa	Known RBP	4.07	□□□□□ -1.76
SEC39	YLR440C	ATO3	Q12359	275 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	YCR024C-B	Q3E7Z8	88 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	RRT15	Q3E811	62 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	YHR139C-A	O13536	103 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	RPL15A	P05748	204 aa	Known RBP	4.07	□□□□□ -1.76
SEC39	YLR440C	RPP1	P38786	293 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	CDC1	P40986	491 aa		4.07	□□□□□ -1.76
SEC39	YLR440C	YGR045C	P53229	120 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 39.1 ms