RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YGR269WP40326 108 aa4.11□□□□□ -1.75
DEF1YKL054C POP3P53833 195 aaPredicted RBP4.11□□□□□ -1.75
DEF1YKL054C PRE1P22141 198 aaKnown RBP4.1□□□□□ -1.75
DEF1YKL054C YBR209WP38311 105 aa4.1□□□□□ -1.75
DEF1YKL054C SNU13P39990 126 aaKnown RBP4.1□□□□□ -1.75
DEF1YKL054C GRX5Q02784 150 aa4.1□□□□□ -1.75
DEF1YKL054C CUE4Q04201 117 aaPredicted RBP4.1□□□□□ -1.75
DEF1YKL054C NMA1Q06178 401 aaKnown RBP4.1□□□□□ -1.75
DEF1YKL054C UTR5P32630 166 aa4.1□□□□□ -1.75
DEF1YKL054C MPC1P53157 130 aaKnown RBP4.1□□□□□ -1.75
DEF1YKL054C YLR365WQ7LIF2 110 aa4.1□□□□□ -1.75
DEF1YKL054C MRPS9P38120 278 aa4.09□□□□□ -1.75
DEF1YKL054C CIS3P47001 227 aa4.09□□□□□ -1.75
DEF1YKL054C KRE1P17260 313 aa4.09□□□□□ -1.76
DEF1YKL054C YMR090WQ04304 227 aaKnown RBP4.09□□□□□ -1.76
DEF1YKL054C MIC10Q96VH5 97 aa4.09□□□□□ -1.76
DEF1YKL054C COX8P04039 78 aa4.07□□□□□ -1.76
DEF1YKL054C YGL010WP25338 174 aa4.07□□□□□ -1.76
DEF1YKL054C PEX4P29340 183 aa4.07□□□□□ -1.76
DEF1YKL054C AGA2P32781 87 aa4.07□□□□□ -1.76
DEF1YKL054C SPO73P40031 143 aa4.07□□□□□ -1.76
DEF1YKL054C RAF1Q06891 181 aa4.07□□□□□ -1.76
DEF1YKL054C VPS68Q12016 184 aa4.07□□□□□ -1.76
DEF1YKL054C SVP26P38869 228 aa4.06□□□□□ -1.76
DEF1YKL054C KSH1Q8TGJ3 72 aa4.06□□□□□ -1.76
DEF1YKL054C BNI1P41832 1953 aa4.06□□□□□ -1.76
DEF1YKL054C YGL149WP53116 101 aa4.06□□□□□ -1.76
DEF1YKL054C ELP6Q04868 273 aa4.06□□□□□ -1.76
DEF1YKL054C CMC4Q3E7A9 73 aa4.06□□□□□ -1.76
DEF1YKL054C PAU12P53343 120 aa4.05□□□□□ -1.76
DEF1YKL054C FIT2Q08906 153 aa4.05□□□□□ -1.76
DEF1YKL054C LYS2P07702 1392 aa4.05□□□□□ -1.76
DEF1YKL054C RPL40AP0CH08 128 aaKnown RBP4.04□□□□□ -1.76
DEF1YKL054C RPL40BP0CH09 128 aaKnown RBP4.04□□□□□ -1.76
DEF1YKL054C HPA3P39979 161 aa4.04□□□□□ -1.76
DEF1YKL054C REV3P14284 1504 aa4.04□□□□□ -1.76
DEF1YKL054C UBC4P15731 148 aa4.03□□□□□ -1.76
DEF1YKL054C HSP10P38910 106 aa4.03□□□□□ -1.76
DEF1YKL054C GTT1P40582 234 aa4.03□□□□□ -1.76
DEF1YKL054C MRPL44P19956 98 aa4.03□□□□□ -1.76
DEF1YKL054C YDR114CQ04597 100 aa4.03□□□□□ -1.76
DEF1YKL054C PAU21P0CE86 164 aa4.02□□□□□ -1.77
DEF1YKL054C PAU22P0CE87 164 aa4.02□□□□□ -1.77
DEF1YKL054C DCV1P43595 202 aa4.02□□□□□ -1.77
DEF1YKL054C FIT1Q04433 528 aa4.02□□□□□ -1.77
DEF1YKL054C RSF2P46974 1380 aa4.02□□□□□ -1.77
DEF1YKL054C CDC39P25655 2108 aaKnown RBP4.02□□□□□ -1.77
DEF1YKL054C GEA2P39993 1459 aaKnown RBP4.02□□□□□ -1.77
DEF1YKL054C YDR029WQ12111 104 aa4.02□□□□□ -1.77
DEF1YKL054C FUN14P18411 198 aa4.01□□□□□ -1.77
DEF1YKL054C FIT3Q08907 204 aa4.01□□□□□ -1.77
DEF1YKL054C PAU2P32612 120 aa4.01□□□□□ -1.77
DEF1YKL054C YFL051CP43552 160 aa4.01□□□□□ -1.77
DEF1YKL054C ECM31P38122 312 aa4□□□□□ -1.77
DEF1YKL054C SEN15Q04675 128 aa4□□□□□ -1.77
DEF1YKL054C RDS3Q06835 107 aaPredicted RBP4□□□□□ -1.77
DEF1YKL054C YDL157CQ12082 118 aa4□□□□□ -1.77
DEF1YKL054C CAT8P39113 1433 aa4□□□□□ -1.77
DEF1YKL054C STF2P16965 84 aa3.99□□□□□ -1.77
DEF1YKL054C YPR153WQ06537 140 aa3.99□□□□□ -1.77
DEF1YKL054C SWC7Q06707 132 aa3.99□□□□□ -1.77
DEF1YKL054C NAT5Q08689 176 aa3.99□□□□□ -1.77
DEF1YKL054C RPS25BP0C0T4 108 aaKnown RBP3.99□□□□□ -1.77
DEF1YKL054C RPS25AQ3E792 108 aaPredicted RBP3.99□□□□□ -1.77
DEF1YKL054C RIF1P29539 1916 aa3.99□□□□□ -1.77
DEF1YKL054C HMRA1P0CY11 126 aa3.98□□□□□ -1.77
DEF1YKL054C YER187WP40102 141 aa3.98□□□□□ -1.77
DEF1YKL054C BRP1P53194 125 aa3.98□□□□□ -1.77
DEF1YKL054C HRT1Q08273 121 aa3.98□□□□□ -1.77
DEF1YKL054C COA6Q3E846 104 aa3.98□□□□□ -1.77
DEF1YKL054C PAU24P38155 120 aa3.98□□□□□ -1.77
DEF1YKL054C PEP8P40335 379 aa3.98□□□□□ -1.77
DEF1YKL054C YPL067CQ02754 198 aa3.98□□□□□ -1.77
DEF1YKL054C YPL261CQ08976 102 aa3.98□□□□□ -1.77
DEF1YKL054C YMR030W-AQ3E760 96 aa3.98□□□□□ -1.77
DEF1YKL054C YHR022CP38763 256 aa3.97□□□□□ -1.77
DEF1YKL054C IGO1P53897 168 aa3.97□□□□□ -1.77
DEF1YKL054C YIL014C-AQ02598 104 aa3.97□□□□□ -1.77
DEF1YKL054C HYR1P40581 163 aaKnown RBP3.97□□□□□ -1.77
DEF1YKL054C AVO2Q04749 426 aa3.97□□□□□ -1.77
DEF1YKL054C YOS1Q3E834 85 aa3.97□□□□□ -1.77
DEF1YKL054C SEC7P11075 2009 aaKnown RBP3.97□□□□□ -1.77
DEF1YKL054C GEA1P47102 1408 aaPredicted RBP3.96□□□□□ -1.77
DEF1YKL054C RTC6O14464 93 aa3.96□□□□□ -1.78
DEF1YKL054C MDM35O60200 86 aa3.96□□□□□ -1.78
DEF1YKL054C SOD1P00445 154 aaKnown RBP3.96□□□□□ -1.78
DEF1YKL054C IPT1P38954 527 aa3.96□□□□□ -1.78
DEF1YKL054C EMC5P40540 141 aa3.96□□□□□ -1.78
DEF1YKL054C RRT15Q3E811 62 aa3.96□□□□□ -1.78
DEF1YKL054C FPR1P20081 114 aaKnown RBP3.95□□□□□ -1.78
DEF1YKL054C HSP150P32478 413 aa3.95□□□□□ -1.78
DEF1YKL054C YKR045CP36138 183 aa3.95□□□□□ -1.78
DEF1YKL054C MRPL11P36521 249 aaPredicted RBP3.95□□□□□ -1.78
DEF1YKL054C MSL1P40567 111 aaPredicted RBP3.95□□□□□ -1.78
DEF1YKL054C YJL144WP47009 104 aa3.95□□□□□ -1.78
DEF1YKL054C DAD1Q12248 94 aa3.95□□□□□ -1.78
DEF1YKL054C RSM19P53733 91 aaPredicted RBP3.95□□□□□ -1.78
DEF1YKL054C YEL014CP39999 101 aa3.94□□□□□ -1.78
DEF1YKL054C CYT2Q00873 224 aa3.94□□□□□ -1.78
DEF1YKL054C GPI11Q06636 219 aa3.94□□□□□ -1.78
Retrieved 100 of 5,963 RNA–protein pairs in 32.2 ms