RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C YER145C-AA0A023PYF4 145 aa1.7□□□□□ -2.14
UFD4YKL010C SEC4P07560 215 aaKnown RBP1.7□□□□□ -2.14
UFD4YKL010C HSP12P22943 109 aaKnown RBP1.7□□□□□ -2.14
UFD4YKL010C PAU7P39545 55 aa1.7□□□□□ -2.14
UFD4YKL010C GAT2P40209 560 aa1.7□□□□□ -2.14
UFD4YKL010C NUP53Q03790 475 aa1.7□□□□□ -2.14
UFD4YKL010C YTH1Q06102 208 aaPredicted RBP1.7□□□□□ -2.14
UFD4YKL010C INO2P26798 304 aa1.7□□□□□ -2.14
UFD4YKL010C ELF1P36053 145 aa1.7□□□□□ -2.14
UFD4YKL010C PRY2P36110 329 aa1.7□□□□□ -2.14
UFD4YKL010C UIP3P39547 235 aa1.7□□□□□ -2.14
UFD4YKL010C YPL073CP40323 161 aa1.7□□□□□ -2.14
UFD4YKL010C YPI1P43587 155 aa1.7□□□□□ -2.14
UFD4YKL010C BNA2P47125 453 aa1.7□□□□□ -2.14
UFD4YKL010C YPL077CQ02831 240 aa1.7□□□□□ -2.14
UFD4YKL010C GRH1Q04410 372 aaKnown RBP1.7□□□□□ -2.14
UFD4YKL010C YCL001W-BQ96VH2 84 aa1.7□□□□□ -2.14
UFD4YKL010C NUM1Q00402 2748 aa1.69□□□□□ -2.14
UFD4YKL010C VAR1P02381 398 aa1.69□□□□□ -2.14
UFD4YKL010C YGL010WP25338 174 aa1.69□□□□□ -2.14
UFD4YKL010C SBH2P52871 88 aa1.69□□□□□ -2.14
UFD4YKL010C YIP1P53039 248 aa1.69□□□□□ -2.14
UFD4YKL010C VPS71Q03433 280 aa1.69□□□□□ -2.14
UFD4YKL010C GPI19Q04082 140 aa1.69□□□□□ -2.14
UFD4YKL010C YMR317WQ04893 1140 aa1.69□□□□□ -2.14
UFD4YKL010C VTS1Q08831 523 aaKnown RBP RIP-Chip data1.69□□□□□ -2.14not detected
UFD4YKL010C BEM2P39960 2167 aaKnown RBP1.69□□□□□ -2.14
UFD4YKL010C YBR056W-AI2HB52 66 aa1.69□□□□□ -2.14
UFD4YKL010C RPP2AP05319 106 aaKnown RBP1.69□□□□□ -2.14
UFD4YKL010C MOT3P54785 490 aaKnown RBP1.69□□□□□ -2.14
UFD4YKL010C MRPL23Q12487 163 aaPredicted RBP1.69□□□□□ -2.14
UFD4YKL010C RPL11AP0C0W9 174 aaKnown RBP1.69□□□□□ -2.14
UFD4YKL010C LSM2P38203 95 aaKnown RBP1.69□□□□□ -2.14
UFD4YKL010C YBR090CP38253 122 aa1.69□□□□□ -2.14
UFD4YKL010C YIL163CP40448 117 aa1.69□□□□□ -2.14
UFD4YKL010C HAC1P41546 238 aa1.69□□□□□ -2.14
UFD4YKL010C RPL11BQ3E757 174 aaPredicted RBP1.69□□□□□ -2.14
UFD4YKL010C YMR316C-AI2HB70 103 aa1.68□□□□□ -2.14
UFD4YKL010C RPL27AP0C2H6 136 aaKnown RBP1.68□□□□□ -2.14
UFD4YKL010C RPL27BP0C2H7 136 aaKnown RBP1.68□□□□□ -2.14
UFD4YKL010C CPR1P14832 162 aaKnown RBP1.68□□□□□ -2.14
UFD4YKL010C YER076CP40049 302 aa1.68□□□□□ -2.14
UFD4YKL010C YFR045WP43617 309 aa1.68□□□□□ -2.14
UFD4YKL010C SDS23P53172 527 aa1.68□□□□□ -2.14
UFD4YKL010C TMA7Q3E764 64 aaKnown RBP1.68□□□□□ -2.14
UFD4YKL010C YNL200CP40165 246 aaKnown RBP1.68□□□□□ -2.14
UFD4YKL010C YHP1Q04116 353 aa1.68□□□□□ -2.14
UFD4YKL010C SCW10Q04951 389 aa1.68□□□□□ -2.14
UFD4YKL010C MSC3Q05812 728 aa1.68□□□□□ -2.14
UFD4YKL010C RPL39P04650 51 aa1.68□□□□□ -2.14
UFD4YKL010C DUT1P33317 147 aa1.68□□□□□ -2.14
UFD4YKL010C ECM33P38248 429 aaKnown RBP1.68□□□□□ -2.14
UFD4YKL010C URM1P40554 99 aaPredicted RBP1.68□□□□□ -2.14
UFD4YKL010C YNL234WP53857 426 aa1.68□□□□□ -2.14
UFD4YKL010C CRZ1P53968 678 aa1.68□□□□□ -2.14
UFD4YKL010C COA3Q3E7B2 85 aa1.68□□□□□ -2.14
UFD4YKL010C YKR032WP36127 104 aa1.68□□□□□ -2.14
UFD4YKL010C PET8P38921 284 aa1.68□□□□□ -2.14
UFD4YKL010C TOM7P53507 60 aa1.68□□□□□ -2.14
UFD4YKL010C DPP1Q05521 289 aa1.68□□□□□ -2.14
UFD4YKL010C ATG39Q06159 398 aa1.68□□□□□ -2.14
UFD4YKL010C YIL014C-AQ02598 104 aa1.67□□□□□ -2.14
UFD4YKL010C COX17Q12287 69 aa1.67□□□□□ -2.14
UFD4YKL010C YNL146C-AQ3E7Z1 64 aa1.67□□□□□ -2.14
UFD4YKL010C CCW14O13547 238 aa1.67□□□□□ -2.14
UFD4YKL010C RPL15AP05748 204 aaKnown RBP1.67□□□□□ -2.14
UFD4YKL010C ZRT1P32804 376 aa1.67□□□□□ -2.14
UFD4YKL010C YKR041WP36134 250 aa1.67□□□□□ -2.14
UFD4YKL010C PAM17P36147 197 aa1.67□□□□□ -2.14
UFD4YKL010C YIR020CP40575 100 aa1.67□□□□□ -2.14
UFD4YKL010C RPL15BP54780 204 aaPredicted RBP1.67□□□□□ -2.14
UFD4YKL010C AQY1P0CD91 305 aa1.67□□□□□ -2.14
UFD4YKL010C HAP3P13434 144 aa1.67□□□□□ -2.14
UFD4YKL010C RPS2P25443 254 aaKnown RBP1.67□□□□□ -2.14
UFD4YKL010C RRT1P38192 103 aa1.67□□□□□ -2.14
UFD4YKL010C ABM1P47146 123 aa1.67□□□□□ -2.14
UFD4YKL010C NAT5Q08689 176 aa1.67□□□□□ -2.14
UFD4YKL010C ATO3Q12359 275 aa1.67□□□□□ -2.14
UFD4YKL010C YDR114CQ04597 100 aa1.66□□□□□ -2.14
UFD4YKL010C HTL1Q9URQ5 78 aa1.66□□□□□ -2.14
UFD4YKL010C SEC16P48415 2195 aaKnown RBP1.66□□□□□ -2.14
UFD4YKL010C BLM10P43583 2143 aa1.66□□□□□ -2.14
UFD4YKL010C RPL23AP0CX41 137 aaKnown RBP1.66□□□□□ -2.14
UFD4YKL010C RPL23BP0CX42 137 aaKnown RBP1.66□□□□□ -2.14
UFD4YKL010C YKR070WP36151 352 aaKnown RBP1.66□□□□□ -2.14
UFD4YKL010C MBB1P39534 108 aa1.66□□□□□ -2.14
UFD4YKL010C POR2P40478 281 aa1.66□□□□□ -2.14
UFD4YKL010C MRPL49P40858 161 aaPredicted RBP1.66□□□□□ -2.14
UFD4YKL010C POP3P53833 195 aaPredicted RBP1.66□□□□□ -2.14
UFD4YKL010C YIL102C-AQ2V2P5 75 aa1.66□□□□□ -2.14
UFD4YKL010C CUP2P15315 225 aa1.66□□□□□ -2.14
UFD4YKL010C YKL070WP36087 169 aa1.66□□□□□ -2.14
UFD4YKL010C MRPL11P36521 249 aaPredicted RBP1.66□□□□□ -2.14
UFD4YKL010C POP7P38291 140 aa1.66□□□□□ -2.14
UFD4YKL010C AGE2P40529 298 aa1.66□□□□□ -2.14
UFD4YKL010C NCA3P46955 337 aa1.66□□□□□ -2.14
UFD4YKL010C CWC27Q02770 301 aa1.66□□□□□ -2.14
UFD4YKL010C CSM4Q08955 156 aa1.66□□□□□ -2.14
UFD4YKL010C RDL1Q12305 139 aaKnown RBP1.66□□□□□ -2.14
UFD4YKL010C MRPS12P53732 153 aa1.66□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms