RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MIEF1Q9NQG6 463 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PDGFCQ9NRA1 345 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SUCOQ9UBS9 1254 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM88BA6NKF7 163 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RHOCP08134 193 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ALPPL2P10696 532 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PPM1AP35813 382 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TUFMP49411 452 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CARSP49589 748 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ARSJQ5FYB0 599 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 C6orf10Q5SRN2 563 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 STAG2Q8N3U4 1231 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 B3GALNT2Q8NCR0 500 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RPRD1AQ96P16 312 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FANCFQ9NPI8 374 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RASA4BC9J798 803 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 RASA4O43374 803 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ATP5HO75947 161 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CYP19A1P11511 503 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PCNAP12004 261 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 S100GP29377 79 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MIIPQ5JXC2 388 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ALKBH5Q6P6C2 394 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ENAHQ8N8S7 591 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 C12orf50Q8NA57 414 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 USP28Q96RU2 1077 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PNKPQ96T60 521 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 DESI2Q9BSY9 194 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM39BQ9GZU3 492 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 VCPKMTQ9H867 229 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SLC28A3Q9HAS3 691 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF304Q9HCX3 659 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 GAKO14976 1311 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC188H7C350 402 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CNPP09543 421 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 RRM1P23921 792 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 HNRNPH1P31943 449 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF827Q17R98 1081 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 GRAMD1BQ3KR37 738 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 KLHL35Q6PF15 583 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SARM1Q6SZW1 724 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SIX5Q8N196 739 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PPM1NQ8N819 430 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 BSNDQ8WZ55 320 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 HPS3Q969F9 1004 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 REPS1Q96D71 796 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SLC13A1Q9BZW2 595 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 POTECB2RU33 542 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 H3BMM5 538 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PDE2AO00408 941 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PALMO75781 387 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 RHOBTB1O94844 696 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 EIF4A3P38919 411 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 IL2P60568 153 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 NUDCD3Q8IVD9 361 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 GPC2Q8N158 579 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SYT2Q8N9I0 419 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PCYOX1LQ8NBM8 494 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 RFWD2Q8NHY2 731 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 RERGQ96A58 199 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 VPS33AQ96AX1 596 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CENPTQ96BT3 561 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SNF8Q96H20 258 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CLMNQ96JQ2 1002 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 AGAP3Q96P47 875 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 OSBPL1AQ9BXW6 950 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM4Q9C037 500 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ASAH2Q9NR71 780 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PPARGC1AQ9UBK2 798 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SPATA31A1Q5TZJ5 1347 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 GRXCR2A6NFK2 248 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MYO1GB0I1T2 1018 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CYB561D2O14569 222 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 EXTL3O43909 919 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ADCY3O60266 1144 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 EYA4O95677 639 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 FGGP02679 453 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF746Q6NUN9 644 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CYP20A1Q6UW02 462 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ATXN7L3BQ96GX2 97 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 AASDHPPTQ9NRN7 309 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 AAR2Q9Y312 384 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ARHGEF40Q8TER5 1519 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MGAT4DA6NG13 374 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 POTEMA6NI47 508 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 GUCY1B2O75343 617 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 GCATO75600 419 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 HIST1H2ABP04908 130 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 POLBP06746 335 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 APRTP07741 180 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 VSNL1P62760 191 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 XRCC4Q13426 336 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC142Q17RM4 750 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 EDRF1Q3B7T1 1238 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SYCP2LQ5T4T6 812 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 NAPEPLDQ6IQ20 393 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MRNIPQ6NTE8 343 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 FBXL19Q6PCT2 694 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms