RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DNAJC25Q9H1X3 360 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 SMYD3Q9H7B4 428 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 CRTAC1Q9NQ79 661 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 CEP72Q9P209 647 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 MAGEC2Q9UBF1 373 aaPredicted RBP19.48■□□□□ 0.71
CLN3-259ENST00000637551 GTF3C4Q9UKN8 822 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 CFAP54Q96N23 3096 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 GREB1Q4ZG55 1949 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 MYO10Q9HD67 2058 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 CILPO75339 1184 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 WEE2P0C1S8 567 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 LAMP2P13473 410 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 PTPN1P18031 435 aaKnown RBP19.47■□□□□ 0.71
CLN3-259ENST00000637551 ATF6P18850 670 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 TPD52L1Q16890 204 aaPredicted RBP19.47■□□□□ 0.71
CLN3-259ENST00000637551 RNF135Q8IUD6 432 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 UBALD2Q8IYN6 164 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 PCED1BQ96HM7 432 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 CNOT6LQ96LI5 555 aaKnown RBP19.47■□□□□ 0.71
CLN3-259ENST00000637551 C8orf48Q96LL4 319 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 NT5C1AQ9BXI3 368 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 LRRC3Q9BY71 257 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 APOBEC3GQ9HC16 384 aaKnown RBP19.47■□□□□ 0.71
CLN3-259ENST00000637551 CDH22Q9UJ99 828 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 POLIQ9UNA4 740 aa19.47■□□□□ 0.71
CLN3-259ENST00000637551 MRPS23Q9Y3D9 190 aaKnown RBP19.47■□□□□ 0.71
CLN3-259ENST00000637551 MYBPHLA2RUH7 354 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 ANHXE9PGG2 379 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 ACAT1P24752 427 aaKnown RBP19.46■□□□□ 0.71
CLN3-259ENST00000637551 EEF1GP26641 437 aaKnown RBP19.46■□□□□ 0.71
CLN3-259ENST00000637551 CDC25CP30307 473 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 GCNT1Q02742 428 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 KCNH2Q12809 1159 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 SKOR2Q2VWA4 1001 aaPredicted RBP19.46■□□□□ 0.71
CLN3-259ENST00000637551 TMC8Q8IU68 726 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 SEMA4DQ92854 862 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 FGF13Q92913 245 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 MYLPFQ96A32 169 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 SEPT5Q99719 369 aaPredicted RBP19.46■□□□□ 0.71
CLN3-259ENST00000637551 TMLHEQ9NVH6 421 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 SORCS3Q9UPU3 1222 aa19.46■□□□□ 0.71
CLN3-259ENST00000637551 NUP210Q8TEM1 1887 aaPredicted RBP19.45■□□□□ 0.7
CLN3-259ENST00000637551 NOL4O94818 638 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 CLSTN1O94985 981 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 PFKLP17858 780 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 DDX6P26196 483 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLN3-259ENST00000637551 GBP2P32456 591 aaPredicted RBP19.45■□□□□ 0.7
CLN3-259ENST00000637551 PTPN21Q16825 1174 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 DNAJB7Q7Z6W7 309 aaPredicted RBP19.45■□□□□ 0.7
CLN3-259ENST00000637551 IRF2BP1Q8IU81 584 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 NPAS3Q8IXF0 933 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 E2F7Q96AV8 911 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 SMARCD1Q96GM5 515 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 NT5C1BQ96P26 610 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 CORO1BQ9BR76 489 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 NAT10Q9H0A0 1025 aaKnown RBP19.45■□□□□ 0.7
CLN3-259ENST00000637551 SDCBP2Q9H190 292 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 MMRN2Q9H8L6 949 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 TRPV4Q9HBA0 871 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 PNPLA8Q9NP80 782 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 COMMD8Q9NX08 183 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 SLC27A5Q9Y2P5 690 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 PATJQ8NI35 1801 aa19.45■□□□□ 0.7
CLN3-259ENST00000637551 OBSL1O75147 1896 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 PDGFRBP09619 1106 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 PPP3CCP48454 512 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 NDST1P52848 882 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 MTMR3Q13615 1198 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 CUL2Q13617 745 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 MAN2A1Q16706 1144 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 SPOPLQ6IQ16 392 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 SCARA5Q6ZMJ2 495 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 GET4Q7L5D6 327 aaPredicted RBP19.44■□□□□ 0.7
CLN3-259ENST00000637551 ENOSF1Q7L5Y1 443 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 TTC9BQ8N6N2 239 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 LMO3Q8TAP4 145 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 GCNAQ96QF7 691 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 MYADMQ96S97 322 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 PI4K2AQ9BTU6 479 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 TTLL2Q9BWV7 592 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 HCFC1R1Q9NWW0 138 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 TMEM63CQ9P1W3 806 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 KIAA1257Q9ULG3 409 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 NME7Q9Y5B8 376 aa19.44■□□□□ 0.7
CLN3-259ENST00000637551 ZNF638Q14966 1978 aaKnown RBP19.44■□□□□ 0.7
CLN3-259ENST00000637551 CYP2F1P24903 491 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 ANXA13P27216 316 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 CDH8P55286 799 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 PSMC1P62191 440 aaKnown RBP19.43■□□□□ 0.7
CLN3-259ENST00000637551 TAF12Q16514 161 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 SLC5A9Q2M3M2 681 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 MDH1BQ5I0G3 518 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 HNRNPABQ99729 332 aaKnown RBP19.43■□□□□ 0.7
CLN3-259ENST00000637551 BPIFA3Q9BQP9 254 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 CSNK1G1Q9HCP0 422 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 CISHQ9NSE2 258 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 NCANO14594 1321 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 MYH10P35580 1976 aa19.43■□□□□ 0.7
CLN3-259ENST00000637551 ATP2C2O75185 946 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 ECI2O75521 394 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms