RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SYT15Q9BQS2 421 aa21.27■■□□□ 1
CLN3-250ENST00000636839 ABCB6Q9NP58 842 aa21.27■■□□□ 1
CLN3-250ENST00000636839 AVENQ9NQS1 362 aaPredicted RBP21.27■■□□□ 1
CLN3-250ENST00000636839 MARCH5Q9NX47 278 aa21.27■■□□□ 1
CLN3-250ENST00000636839 ANAPC7Q9UJX3 599 aa21.27■■□□□ 1
CLN3-250ENST00000636839 ALG6Q9Y672 507 aa21.27■■□□□ 1
CLN3-250ENST00000636839 GOLGA8SH3BPF8 625 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 TADA2AO75478 443 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 DGKIO75912 1065 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 BEST1O76090 585 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 MTA2O94776 668 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 MYBL1P10243 752 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 HADHBP55084 474 aaKnown RBP21.26■□□□□ 0.99
CLN3-250ENST00000636839 LIN9Q5TKA1 542 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 TMEM199Q8N511 208 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 BCL7CQ8WUZ0 217 aaPredicted RBP21.26■□□□□ 0.99
CLN3-250ENST00000636839 SLC35F5Q8WV83 523 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 TOP1MTQ969P6 601 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 CAPZA3Q96KX2 299 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 B3GNT5Q9BYG0 378 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 RHOBTB2Q9BYZ6 727 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 GPR62Q9BZJ7 368 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 UVRAGQ9P2Y5 699 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 SNX12Q9UMY4 172 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 SAR1BQ9Y6B6 198 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 CYP11A1P05108 521 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 PEX26Q7Z412 305 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 LRRTM3Q86VH5 581 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 BADQ92934 168 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 C18orf8Q96DM3 657 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 TRIM11Q96F44 468 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 PIWIL1Q96J94 861 aaKnown RBP21.26■□□□□ 0.99
CLN3-250ENST00000636839 TMLHEQ9NVH6 421 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 SMARCAL1Q9NZC9 954 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 CDC23Q9UJX2 597 aa21.26■□□□□ 0.99
CLN3-250ENST00000636839 ABHD14A-ACY1A0A1B0GW23 586 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 E5RJQ4 531 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 ALDH2P05091 517 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 CALB1P05937 261 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 GALTP07902 379 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 FAM163BP0C2L3 166 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 EPHB4P54760 987 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 WDR5P61964 334 aaKnown RBP21.25■□□□□ 0.99
CLN3-250ENST00000636839 OVOS1Q6IE37 1185 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 XYLT1Q86Y38 959 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 ANKRD52Q8NB46 1076 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 CARD6Q9BX69 1037 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 SYNCQ9H7C4 482 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 TMEM30AQ9NV96 361 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 EHD2Q9NZN4 543 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 HESX1Q9UBX0 185 aa21.25■□□□□ 0.99
CLN3-250ENST00000636839 FNDC1Q4ZHG4 1894 aaPredicted RBP21.25■□□□□ 0.99
CLN3-250ENST00000636839 HOXA2O43364 376 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 COMTP21964 271 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 CACNA2D1P54289 1103 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 STILQ15468 1287 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 PCED1BQ96HM7 432 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 OSBPL9Q96SU4 736 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 FAN1Q9Y2M0 1017 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 TMEM189-UBE2V1I3L0A0 370 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 OR4Q2P0C623 313 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 SYN1P17600 705 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 OGDHQ02218 1023 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 TAS1R1Q7RTX1 841 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 METTL23Q86XA0 190 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 CEP57Q86XR8 500 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 C7orf61Q8IZ16 206 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 MCEEQ96PE7 176 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 HNRNPABQ99729 332 aaKnown RBP21.24■□□□□ 0.99
CLN3-250ENST00000636839 PARVAQ9NVD7 372 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 ADAM28Q9UKQ2 775 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 PCDHB8Q9UN66 801 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 COL4A6Q14031 1691 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 ALPK3Q96L96 1907 aa21.24■□□□□ 0.99
CLN3-250ENST00000636839 PDE2AO00408 941 aaPredicted RBP21.23■□□□□ 0.99
CLN3-250ENST00000636839 MARCKSL1P49006 195 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 PPP1R15BQ5SWA1 713 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 DNAJC24Q6P3W2 148 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 SCUBE3Q8IX30 993 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 MS4A14Q96JA4 679 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 MED10Q9BTT4 135 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 CWH43Q9H720 699 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 CDH9Q9ULB4 789 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 TSC2P49815 1807 aa21.23■□□□□ 0.99
CLN3-250ENST00000636839 NAA30Q147X3 362 aaPredicted RBP21.22■□□□□ 0.99
CLN3-250ENST00000636839 RPS6KA1Q15418 735 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 TAF5Q15542 800 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 FAM171A1Q5VUB5 890 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 LRRC43Q8N309 656 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 JOSD2Q8TAC2 188 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 FEZF2Q8TBJ5 459 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 TSC1Q92574 1164 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 KRT35Q92764 455 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 KCNK16Q96T55 309 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 SLC4A5Q9BY07 1137 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 IL23AQ9NPF7 189 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 AMFRQ9UKV5 643 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 TMEM191CA6NGB0 347 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 RFC1P35251 1148 aaPredicted RBP21.22■□□□□ 0.99
CLN3-250ENST00000636839 GABRB2P47870 512 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms