RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 POLNQ7Z5Q5 900 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 ACOT1Q86TX2 421 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 METTL23Q86XA0 190 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 XYLT1Q86Y38 959 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 DNAAF5Q86Y56 855 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 ABI1Q8IZP0 508 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 MMGT1Q8N4V1 131 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 WDTC1Q8N5D0 677 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 RNF169Q8NCN4 708 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 FEZF2Q8TBJ5 459 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 COG1Q8WTW3 980 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 MCRS1Q96EZ8 462 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 HSFY1Q96LI6 401 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 CPXM1Q96SM3 734 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLN3-248ENST00000636355 SLC4A5Q9BY07 1137 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 SYNCQ9H7C4 482 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 PCDHA3Q9Y5H8 950 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 COL4A6Q14031 1691 aa11.17□□□□□ -0.62
CLN3-248ENST00000636355 VWA8A3KMH1 1905 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 GOLGA6L10A0A0M3HER8 536 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 XPO1O14980 1071 aaKnown RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 SYN3O14994 580 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 SART1O43290 800 aaKnown RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 NCK2O43639 380 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 B3GAT3O94766 335 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 CALCAP01258 141 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 ERBB2P04626 1255 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 CLTBP09497 229 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 FGFR1P11362 822 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 COMTP21964 271 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 RWDD2BP57060 319 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 TLE2Q04725 743 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 ELAVL2Q12926 359 aaKnown RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 MESDQ14696 234 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 GPNMBQ14956 572 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 TRIM60Q495X7 471 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 PPP1R26Q5T8A7 1209 aaPredicted RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 SEL1L2Q5TEA6 688 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 WSCD1Q658N2 575 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 DCUN1D2Q6PH85 259 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 DSTYKQ6XUX3 929 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 TMEM110Q86TL2 294 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 RTN4RL1Q86UN2 441 aaPredicted RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 CRIPAKQ8N1N5 446 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 LRRC43Q8N309 656 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 C3orf58Q8NDZ4 430 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 DBF4BQ8NFT6 615 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 SLC35F5Q8WV83 523 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 ANKRD7Q92527 254 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 RNPC3Q96LT9 517 aaKnown RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 SYT15Q9BQS2 421 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 ACBD6Q9BR61 282 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 TMEM175Q9BSA9 504 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 OXCT2Q9BYC2 517 aaPredicted RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 C11orf49Q9H6J7 331 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 PNPLA8Q9NP80 782 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 RNF19AQ9NV58 838 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 TBC1D13Q9NVG8 400 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 ARGLU1Q9NWB6 273 aaPredicted RBP11.16□□□□□ -0.62
CLN3-248ENST00000636355 MIOSQ9NXC5 875 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 CYTH4Q9UIA0 394 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 PCDHB8Q9UN66 801 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 INPP5FQ9Y2H2 1132 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 PCDHB7Q9Y5E2 793 aa11.16□□□□□ -0.62
CLN3-248ENST00000636355 BRCA2P51587 3418 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 CASTOR2A6NHX0 329 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 DPYSL4O14531 572 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 ENPP3O14638 875 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 SRGAP2O75044 1071 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 POMCP01189 267 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 KRT3P12035 628 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 NPR3P17342 541 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 PEX5P50542 639 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 PSMC1P62191 440 aaKnown RBP11.15□□□□□ -0.62
CLN3-248ENST00000636355 ELF2Q15723 593 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 TEX35Q5T0J7 233 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 SLC26A9Q7LBE3 791 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 NECAB2Q7Z6G3 386 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 TTC30AQ86WT1 665 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 RHOT1Q8IXI2 618 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 COLGALT2Q8IYK4 626 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 KATNAL2Q8IYT4 538 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 TMEM130Q8N3G9 435 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 SPATA4Q8NEY3 305 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 MAIP1Q8WWC4 291 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 KCTD13Q8WZ19 329 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 CAPZA3Q96KX2 299 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 RUNDC3BQ96NL0 473 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 MCEEQ96PE7 176 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 UBXN6Q9BZV1 441 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 GOLPH3Q9H4A6 298 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 SLITRK6Q9H5Y7 841 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 FAM49BQ9NUQ9 324 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLN3-248ENST00000636355 DDX43Q9NXZ2 648 aaKnown RBP11.15□□□□□ -0.62
CLN3-248ENST00000636355 TMEM59LQ9UK28 342 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 LRFN2Q9ULH4 789 aa11.15□□□□□ -0.62
CLN3-248ENST00000636355 PACSIN2Q9UNF0 486 aaPredicted RBP11.15□□□□□ -0.62
CLN3-248ENST00000636355 NME7Q9Y5B8 376 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms