RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 POLHQ9Y253 713 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 AFG3L2Q9Y4W6 797 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHGA9Q9Y5G4 932 aaKnown RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHGA8Q9Y5G5 932 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHGA7Q9Y5G6 932 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHGA6Q9Y5G7 932 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHGA3Q9Y5H0 932 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHA3Q9Y5H8 950 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 WDR17Q8IZU2 1322 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 BCAR3O75815 825 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 ARIH2O95376 493 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 DSC2Q02487 901 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 BOP1Q14137 746 aaKnown RBP3.84□□□□□ -1.79
SCN1A-208ENST00000625916 ABCB5Q2M3G0 1257 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 FAM160B1Q5W0V3 765 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 FAM90A1Q86YD7 464 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 ZDHHC17Q8IUH5 632 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 CPA6Q8N4T0 437 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 SLC46A1Q96NT5 459 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 FSD1LQ9BXM9 530 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 GLOD4Q9HC38 313 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 KLHL13Q9P2N7 655 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 SERPINB13Q9UIV8 391 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 ZDHHC8Q9ULC8 765 aa3.84□□□□□ -1.79
SCN1A-208ENST00000625916 ZNF134P52741 427 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 GPSM2P81274 684 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 SP2Q02086 613 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 ARHGAP40Q5TG30 622 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 EFCAB2Q5VUJ9 269 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 FCRL6Q6DN72 434 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 SHC4Q6S5L8 630 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 NECAB2Q7Z6G3 386 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 MRPL10Q7Z7H8 261 aaKnown RBP3.83□□□□□ -1.8
SCN1A-208ENST00000625916 RP9Q8TA86 221 aaKnown RBP3.83□□□□□ -1.8
SCN1A-208ENST00000625916 ADAMTS15Q8TE58 950 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 NSMCE1Q8WV22 266 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 XAGE5Q8WWM1 108 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 RITA1Q96K30 269 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 FAM118BQ9BPY3 351 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 WDCPQ9H6R7 721 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-208ENST00000625916 ABCF2Q9UG63 623 aa3.83□□□□□ -1.8
SCN1A-208ENST00000625916 FEZ2Q9UHY8 353 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-208ENST00000625916 IGKV2D-30A0A075B6S6 120 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 E5RJQ4 531 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 POC1B-GALNT4F8VUJ3 575 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 EXOC3O60645 756 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 USP1O94782 785 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 FGBP02675 491 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 ATXN1LP0C7T5 689 aaKnown RBP3.82□□□□□ -1.8
SCN1A-208ENST00000625916 SCP2P22307 547 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 IL1R2P27930 398 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 CCKARP32238 428 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 PXNP49023 591 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-208ENST00000625916 FXR1P51114 621 aaKnown RBP eCLIP3.82□□□□□ -1.8
SCN1A-208ENST00000625916 TPTEP56180 551 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 LOXL3P58215 753 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 PCBP2Q15366 365 aaKnown RBP eCLIP3.82□□□□□ -1.8
SCN1A-208ENST00000625916 TBC1D25Q3MII6 688 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 LONRF3Q496Y0 759 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 THEMIS2Q5TEJ8 643 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 SYDE2Q5VT97 1194 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 SERPINA13PQ6UXR4 307 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 PNMA8AQ86V59 439 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-208ENST00000625916 GALNT4Q8N4A0 578 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 NRACQ8N912 160 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 ABHD11Q8NFV4 315 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 PIGOQ8TEQ8 1089 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 ATG4AQ8WYN0 398 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 GLG1Q92896 1179 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 R3HDM4Q96D70 268 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 WWOXQ9NZC7 414 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 HESX1Q9UBX0 185 aa3.82□□□□□ -1.8
SCN1A-208ENST00000625916 FNDC1Q4ZHG4 1894 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 CCDC187A0A096LP49 1063 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 SHTN1A0MZ66 631 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 A1L4Q6 167 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 UBE2Q2LH0YL09 131 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 H7C1Q1 480 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 PDE8BO95263 885 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 PIM1P11309 404 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 PPIFP30405 207 aaKnown RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 ADKP55263 362 aaKnown RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 NOGQ13253 232 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 ZNF268Q14587 947 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 RGS7BPQ6MZT1 257 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 KIRREL2Q6UWL6 708 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 Q6ZWC4 215 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 HEATR3Q7Z4Q2 680 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 IRF2BP2Q7Z5L9 587 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 DDX42Q86XP3 938 aaKnown RBP eCLIP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 TERB1Q8NA31 727 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 PCSK9Q8NBP7 692 aaKnown RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 SPATA3Q8NHX4 192 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 PTDSS2Q9BVG9 487 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 MRPL46Q9H2W6 279 aaKnown RBP3.81□□□□□ -1.8
SCN1A-208ENST00000625916 MTMR4Q9NYA4 1195 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 TRHDEQ9UKU6 1024 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 SSX2IPQ9Y2D8 614 aa3.81□□□□□ -1.8
SCN1A-208ENST00000625916 PRKAB1Q9Y478 270 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms